Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1234 ATGAGGCACTCTCAATATATCTTAGCATTTTTCTTCACTTTAATTCTTACAACTCAAGCAAGACACCATCACCATACAAAACACAAACACTCTTCACATTCTAATAATAATGACAATAATACTAATAATCAATCATATCCTCCTTCTCCTTCTCCTTCTCCTTCTTCCGGAATTTCAATGCCTCCTGTGGCTGCACCCGGTGGTTATGATAATGAAGCTCCTAGTCCTAGTCCCTCTGATGATGATGGCTCCGAAATCTTCAATGTTCGAACATTTGGGGCCATTGGAGATGGTATAGCTGATGATACAAAGTCCTTCAAGATGGCGTGGGACAGTGCTTGCCAAAGTGATTCAGCAATTAACATTGTACTTGTTCCTCGCGGTTTCTCGTTCATGGTCCAGTCTACAATCTTCACTGGTCCCTGTCAAGGTGGCTTAGTGTTAAAGGTTGATGGCACTCTCATGCCACCAGATGGACCTGAATCTTGGCCAAACAACACAAGTAGGCGTCAATGGCTTGTCTTTTACAGAATCAATAATATGTCACTACAAGGAAGTGGTGTTATTGATGGCAGAGGACAAAATTGGTGGGACCTTCCTTGTAAGCCTCATAAGGCATTAAGGTTTTTCATGAGTTCAAACTTGAGTGTGCAAGGACTTAGAATCAAGAACAGTCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAGCGTTCGAGTAGATTCAATCTTCATAACATCTCCAGCACTAAGTCCCAACACTGATGGAATACACATAGAAAACACAAATGACGTAAGGATATACAATTCCGTCATTTCCAACGGTGATGACTGTGTGTCCATTGGAACGGGTTGCTATGATGTTGATATAAAGAACATTACATGTGGTCCCAGCCACGGAATTAGCATTGGTAGTTTGGGAAACCACAACTCAAGAGCCTGTGTGTCAAACATTACAGTAAGAGAGTCAACGATCAAAGGGTCAGACAATGGAGTAAGAATAAAAACATGGCAAGGAGGATCAGGATCAGTATCAAAAGTAACATTCAGCAAGATTCACATGGAGAGTGTACGGAACCCAATAATAATCGACCAATTCTATTGCCTATCGAAAGATTGCAGCAACAAAAGCTCGGCAGTATTTGTATCAGACATAGTATACTCAAACATAAAGGGGACATATGATATAAGGCACCCACCCATGCGTTTCGCTTGCAGTGACTCTGTGCCTTGCACTAACTTAACTCTTTCTGATATTGAGCTTCTTCCTGCACAGGGTGATCTTTTTAATGACCCTTTCTGTTGGAATGCTTATGGCAATTTGGAGACACTAACTATTCCTCCTGTTTCTTGCTTGATTGAGGGTCTTCCTCAGTCTCTTCCAGGGAATGATTTATCTCGTTGTTGA 1407 0.4158 MRHSQYILAFFFTLILTTQARHHHHTKHKHSSHSNNNDNNTNNQSYPPSPSPSPSSGISMPPVAAPGGYDNEAPSPSPSDDDGSEIFNVRTFGAIGDGIADDTKSFKMAWDSACQSDSAINIVLVPRGFSFMVQSTIFTGPCQGGLVLKVDGTLMPPDGPESWPNNTSRRQWLVFYRINNMSLQGSGVIDGRGQNWWDLPCKPHKALRFFMSSNLSVQGLRIKNSPQFHFRFDGCKSVRVDSIFITSPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGTGCYDVDIKNITCGPSHGISIGSLGNHNSRACVSNITVRESTIKGSDNGVRIKTWQGGSGSVSKVTFSKIHMESVRNPIIIDQFYCLSKDCSNKSSAVFVSDIVYSNIKGTYDIRHPPMRFACSDSVPCTNLTLSDIELLPAQGDLFNDPFCWNAYGNLETLTIPPVSCLIEGLPQSLPGNDLSRC* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1234 468 SMART pbh1 315 336 IPR006626 -
Ahy19g1234 468 SMART pbh1 212 261 IPR006626 -
Ahy19g1234 468 SMART pbh1 285 305 IPR006626 -
Ahy19g1234 468 SMART pbh1 344 365 IPR006626 -
Ahy19g1234 468 SMART pbh1 262 283 IPR006626 -
Ahy19g1234 468 SUPERFAMILY Pectin lyase-like 85 454 IPR011050 -
Ahy19g1234 468 Pfam Glycosyl hydrolases family 28 118 421 IPR000743 GO:0004650|GO:0005975
Ahy19g1234 468 ProSitePatterns Polygalacturonase active site. 292 305 IPR000743 GO:0004650|GO:0005975
Ahy19g1234 468 Gene3D - 71 452 IPR012334 -
Ahy19g1234 468 MobiDBLite consensus disorder prediction 23 86 - -
Ahy19g1234 468 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 75 458 - -
Ahy19g1234 468 PANTHER - 75 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1234 Ahy-Chr19 24145466 24150391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1234 81 468 Glycoside Hydrolase AT1G02460 68.966 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1234 - - gmx:100776338 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0754 16 13737956 13741167 Ahy19g1234 19 24145466 24150391 ECH
Ahy19g1234 19 24145466 24150391 Ahy19g1234 19 24145466 24150391 ECH
Ahy19g1234 19 24145466 24150391 Ahy9g0966 9 18785872 18790549 hybridization
Ahy16g0754 16 13737956 13741167 Ahy19g1234 19 24145466 24150391 PCT
Ahy6g0585 6 7129260 7132355 Ahy19g1234 19 24145466 24150391 PCT
Ahy19g1234 19 24145466 24150391 Ahy16g0754 16 13737956 13741167 PCT
Ahy19g1234 19 24145466 24150391 Ahy6g0585 6 7129260 7132355 PCT