Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0754 ATGTTGAGAATGAAGTACTGTCACATTTCAGCACTAGTGTTGTGCATGTTTTTCCTTTCCTTAATTCTTTCAATCCAAGCTAGACATCATTCCCATAAAAGACAGAGACATTCACATTCTCATAAATCATCTAGAACTTTTGATGTAACAAAATTTGGAGCCATTGGAGATGGAATAACAGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGTGAAAGTGAATCAGAATTTAATGTTATTATTGTTCCCAAAGGTTTCTCCTTCCTCATTCAGCCCACTATTTTCACTGGTCCTTGCCATGGTTACTTAGTATTGAAGGTGGATGGAACTATAATGCCACCAGATGGACCTGATTCTTGGCCAAAGAACAATACTAAGCGTCTATGGCTGGTGTTTTATAGAATTAATGGAATGTCACTTGAAGGAGGTGGTTTAATAGATGGAAGAGGAGATAAATGGTGGGAACTTCCTTGTAAGCCTCACAGGGGACCAAATGGAACAACTGCTCCTGGACCTTGTGATAGCCCAATGGCCATAAATTTTTTTATGGGTTCCAACTTGACTGTGCAAGAACTTAGGGTCAGGGACAGCCCCCAGATTCATTTAAGATTTGATGCATGCAGAAGTGTCCACATTGAATCTATCCATATAAAAGCTCCAAGACTAAGCCCCAACACTGATGGAATTCACATAGAAAACAGCACTGATGTCAAAATATATAATACTGTGATTTCTAATGGTGATGATTGTGTGTCCATTGGAACCGGTTGCTATGATGTTGATATAAAGAACATTACATGTGGTCCTGGTCATGGAATCAGCATTGGTAGCTTGGGAAAGTACAACTCTAGAGCATGTGTTTCAAACATTAAGGTGAGAGACTCAGTTATTCAGATGACAGACAATGGAGTTAGGATCAAGACATGGCAAGGTGGATCAGGATATGTATCAGGAATAACATTCAGCAACATTCATATGTATAATGTTAGAAACCCCATGATAATAGACCAATTCTATTGCCTCAAAGAGGGTGAAGTGTGCAGAAACAAAACCTCTGCAGTGGTTGTATCAGACATTCTATACAGAAACATAAAGGGAACATATGATATAAGGAGCCCTCCTATGAGATTTGCATGCAGTGACAGTGTTCCATGCACCAACTTAACCCTCTCAGATATTGAGCTTCTTCCTGATCAAGGAGATATGGTTGTTGATCCTTTCTGTTGGAATGCTTATGGTGATCTCAGGACACAAACCATTCCACCAGTTTTTTGCTTGCTTGATGGATTTCCTCAGTCCATCTTGCACAATGACATAGCTCATTGCACGCGGTATTCATGA 1350 0.3993 MLRMKYCHISALVLCMFFLSLILSIQARHHSHKRQRHSHSHKSSRTFDVTKFGAIGDGITDDTESFKMAWDTACESESEFNVIIVPKGFSFLIQPTIFTGPCHGYLVLKVDGTIMPPDGPDSWPKNNTKRLWLVFYRINGMSLEGGGLIDGRGDKWWELPCKPHRGPNGTTAPGPCDSPMAINFFMGSNLTVQELRVRDSPQIHLRFDACRSVHIESIHIKAPRLSPNTDGIHIENSTDVKIYNTVISNGDDCVSIGTGCYDVDIKNITCGPGHGISIGSLGKYNSRACVSNIKVRDSVIQMTDNGVRIKTWQGGSGYVSGITFSNIHMYNVRNPMIIDQFYCLKEGEVCRNKTSAVVVSDILYRNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPDQGDMVVDPFCWNAYGDLRTQTIPPVFCLLDGFPQSILHNDIAHCTRYS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0754 449 SUPERFAMILY Pectin lyase-like 41 432 IPR011050 -
Ahy16g0754 449 PANTHER - 42 435 - -
Ahy16g0754 449 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 42 435 - -
Ahy16g0754 449 Pfam Glycosyl hydrolases family 28 80 398 IPR000743 GO:0004650|GO:0005975
Ahy16g0754 449 Gene3D - 30 428 IPR012334 -
Ahy16g0754 449 SMART pbh1 319 340 IPR006626 -
Ahy16g0754 449 SMART pbh1 210 236 IPR006626 -
Ahy16g0754 449 SMART pbh1 290 311 IPR006626 -
Ahy16g0754 449 SMART pbh1 237 258 IPR006626 -
Ahy16g0754 449 SMART pbh1 260 280 IPR006626 -
Ahy16g0754 449 ProSitePatterns Polygalacturonase active site. 267 280 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0754 Ahy-Chr16 13737956 13741167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0754 47 445 Glycoside Hydrolase AT1G02460 66.169 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0754 - - lang:109331836 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0754 16 13737956 13741167 Ahy16g0754 16 13737956 13741167 ECH
Ahy16g0754 16 13737956 13741167 Ahy19g1234 19 24145466 24150391 ECH
Ahy16g0754 16 13737956 13741167 Ahy6g0585 6 7129260 7132355 hybridization
Ahy16g0754 16 13737956 13741167 Ahy19g1234 19 24145466 24150391 PCT
Ahy16g0754 16 13737956 13741167 Ahy9g0966 9 18785872 18790549 PCT
Ahy19g1234 19 24145466 24150391 Ahy16g0754 16 13737956 13741167 PCT
Ahy9g0966 9 18785872 18790549 Ahy16g0754 16 13737956 13741167 PCT