Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2378 ATGGCAGCCTCTCTCTCCCTCCAACTTCACTCCTTCCCTCCAAATCCCACCTCATCTTCGCCATCCTCCAACACCAAAATCACCTTCCAACCCTTCAACTTCAAACCATCACTCCCAAAGAAACCTCACCACACAACAGAGCCGTCCGAATTCCCCAACACTAAGAACCACCGCCATCACCATCACCACCACTACAAGAAGCTGAAACATTTCAAACAGAAAGATGCATTTCCATCCTCCTTACCCATCCACACAAAAAATCCACGCTCCATCTACAAAGACATCAAACGATTCGCGCGTCAAGACAAACTCAAAGAAGCACTTACCATTCTCGATTACGTTGACCAGCAGGGAATCCCTGTCAACGCCACCACTTTCTCCACTCTCATTGCCGCTTGCATTCGCACCAAGTCGCTACAACACGGTAGAGAAGTCCACGTCCATATCCGAATCAACGGCTTCGAAAACAACGAGTTTTTGCGAACGAAGCTTGTTCACATGTACACCTCTTGCGGCGCTTTGGAAGAAGCCAAACAAATCTTTAACGAGTTACCCTGTAACAGTGTGTACCCATGGAATGCGTTGTTAAGAGGGTCTGTGATTGCGGGTAAAAAGCACTACCTTGATGTGCTTAAAGCTTATACTGAGATGAGGGCATTGGGTGTTGAGTTGAATGTGTATACTTTCACCACTGTGATCAAGAGTTTCGCCGGTGCACCTGCCCTTTTCCAAGGCCTCAAGGCTCATGGGTTGTTGATCAAGAATGGTTTGGTTGATAGTTCAATTATTAGGACAAGTTTGATTGATTTATACTTCAAGTGTGGGAGGATAAATCTTGCGCGCCGCGTGTTTGACGAAATTCCCAACAGGGATGTTGTGGTTTGGGGAGCAATGGTGGCAGGTTTTGTGCATAATAGGCTGCAGAGGGAGGCGTTGGAATATGTGAGGTGGATGGTGGAGGAAGGAGTGGAGGTTAATTCGGTTGTGGTGATGTCAGTTCTTCCTGCAATTGGGGAAGTTTCTGAGCAGCGATTGGGCAAAGAGGTCCATGCTTATGTGGTGAAGACGAAGGAGTACTATAGGCGAGTGCCTATTAAGTCTGCCTTGATTGATATGTATTGCAAATGTGGGGATATGAGTTCGGCTAGGCGAGTTTTTTATAGCTCGGCGGAGAGGAATTTGGTTTGTTGGACGGCTTTAATGTCCGGTTATGCTTGGAATGGTAGGTTGGAGCAGGCACTGAGGTCGACTATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTTGTGACAGTTGCAACTGTTCTTCCAGTATGTTCTCAGTTGAGGGCTTTGAAACAGGGGAAGCAGGTTCATGCTTATGCTTTGAAGCATTGGTTTTTGCCTAACGCATCCATAACTAATTCGTTGATGGTAATGTACTCGAAGTGTGGCGTGATTGAATATTCCGAAAGACTATTTGACAGTATGGAGAAAAGGACAGTTATTTCATGGACAGCCATGATTGATTCATATGTAGAAAATGGGTATCATCATGAAGCACTTGATGTGATAAGGTCAATGCAATCATCAAAGCATAGGCCGGACTCAGTTGCAATAGCAAGAATGCTGAGTGTTTGTGGTGTGCTAAAACTTTTGAAGCATGGACAAGAGATTCATGCACAGCTCTTGAAAAAGGATTTTGCAAAAGTCCCTTTTGTTTCTGCAGAACTTATCAATATGTATGGGACTTTGGGAGAGGTTAATAAGGCAAAGTTGGTATTTGATGCTGTCCCTGTTAAAGGTTCAATCACATGGACTGCTCTTATTAGGGCCTATGGAAATAATGAATTGTATGAAGGTGCAATTGCTCTTTTCGATAGGATGACATCGAGAGGTTCTACTCCGACGCATTTCACTTTCGATGCAATGCTATCTATCTTCGACAGAGCTGGATTTGTTGATGATGCTTATAGGATATTCAAGTTAATGACTAGATATAAAATTGAACCATCTAAAGAACATTTTGATATAATGGTCCGACTTCTTACCCATGATGGTCAACTGGAGAAAGCTCAAAAACTTGTACAGATGAGTTCTGTTGTATAG 2088 0.4406 MAASLSLQLHSFPPNPTSSSPSSNTKITFQPFNFKPSLPKKPHHTTEPSEFPNTKNHRHHHHHHYKKLKHFKQKDAFPSSLPIHTKNPRSIYKDIKRFARQDKLKEALTILDYVDQQGIPVNATTFSTLIAACIRTKSLQHGREVHVHIRINGFENNEFLRTKLVHMYTSCGALEEAKQIFNELPCNSVYPWNALLRGSVIAGKKHYLDVLKAYTEMRALGVELNVYTFTTVIKSFAGAPALFQGLKAHGLLIKNGLVDSSIIRTSLIDLYFKCGRINLARRVFDEIPNRDVVVWGAMVAGFVHNRLQREALEYVRWMVEEGVEVNSVVVMSVLPAIGEVSEQRLGKEVHAYVVKTKEYYRRVPIKSALIDMYCKCGDMSSARRVFYSSAERNLVCWTALMSGYAWNGRLEQALRSTIWMQQEGFRPDVVTVATVLPVCSQLRALKQGKQVHAYALKHWFLPNASITNSLMVMYSKCGVIEYSERLFDSMEKRTVISWTAMIDSYVENGYHHEALDVIRSMQSSKHRPDSVAIARMLSVCGVLKLLKHGQEIHAQLLKKDFAKVPFVSAELINMYGTLGEVNKAKLVFDAVPVKGSITWTALIRAYGNNELYEGAIALFDRMTSRGSTPTHFTFDAMLSIFDRAGFVDDAYRIFKLMTRYKIEPSKEHFDIMVRLLTHDGQLEKAQKLVQMSSVV* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2378 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Ahy4g2378 695 MobiDBLite consensus disorder prediction 1 62 - -
Ahy4g2378 695 Pfam PPR repeat 468 493 IPR002885 -
Ahy4g2378 695 Pfam PPR repeat 496 524 IPR002885 -
Ahy4g2378 695 Pfam PPR repeat 367 387 IPR002885 -
Ahy4g2378 695 Pfam PPR repeat 265 290 IPR002885 -
Ahy4g2378 695 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 50 688 - -
Ahy4g2378 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Ahy4g2378 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Ahy4g2378 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Ahy4g2378 695 Gene3D Tetratricopeptide repeat domain 441 565 IPR011990 GO:0005515
Ahy4g2378 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Ahy4g2378 695 MobiDBLite consensus disorder prediction 40 54 - -
Ahy4g2378 695 Gene3D Tetratricopeptide repeat domain 204 364 IPR011990 GO:0005515
Ahy4g2378 695 Gene3D Tetratricopeptide repeat domain 365 440 IPR011990 GO:0005515
Ahy4g2378 695 Gene3D Tetratricopeptide repeat domain 89 203 IPR011990 GO:0005515
Ahy4g2378 695 Gene3D Tetratricopeptide repeat domain 566 693 IPR011990 GO:0005515
Ahy4g2378 695 Pfam PPR repeat family 595 639 IPR002885 -
Ahy4g2378 695 Pfam PPR repeat family 393 437 IPR002885 -
Ahy4g2378 695 TIGRFAM PPR: pentatricopeptide repeat domain 632 665 IPR002885 -
Ahy4g2378 695 TIGRFAM PPR: pentatricopeptide repeat domain 265 293 IPR002885 -
Ahy4g2378 695 TIGRFAM PPR: pentatricopeptide repeat domain 496 530 IPR002885 -
Ahy4g2378 695 TIGRFAM PPR: pentatricopeptide repeat domain 597 630 IPR002885 -
Ahy4g2378 695 MobiDBLite consensus disorder prediction 1 32 - -
Ahy4g2378 695 PANTHER OS07G0578800 PROTEIN-RELATED 50 688 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2378 Ahy-Chr4 120686793 120689100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2378 78 690 Glycoside Hydrolase AT3G49170 27.143 6.53e-75 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2378 - - gmx:100809249 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2705 14 134641134 134643499 Ahy4g2378 4 120686793 120689100 hybridization
Ahy19g0687 19 9476710 9478581 Ahy4g2378 4 120686793 120689100 PCT
Ahy9g0563 9 7884713 7886602 Ahy4g2378 4 120686793 120689100 PCT