Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2468 ATGGCTTCAAACAAAGTTATTGCCACCATTTTGGTGCTCTCTCTCTTAGCCTACTCAACACTCACTCATGCCAATTGCCCACCAAAAAAAGCAACTCCACCACCTTCGCCGCCGGTGACGCCGCCACCGTCACCAAAACCAACACCACCAACTCCGACTCCGTCACCAAAACCAACACCCCCAACTCCTACCACTCCATGTCCACCAACTCCAACTCCACCTCCACCATCCCAAGAAAAATGCCCTAAAGATACCCTAAAGTTAGGTGCTTGTGCTGACCTTTTAGGGCTTGTTAACATCATTATTGGGACTCCACCATCAAGCAAGTGTTGTGCATTGATTAAGGGTTTGGCTGATTTGGAAGCAGCACTTTGCCTTTGCACTGCAATTAAGGCCAATGTGCTTGGAATCAACTTGAATGTGCCTATCACACTTGAATTGATCCTTAGTGCATGCCAAAAAACTGTCCCTCCTGGCTTCCAATGTCCTTAA 492 0.4756 MASNKVIATILVLSLLAYSTLTHANCPPKKATPPPSPPVTPPPSPKPTPPTPTPSPKPTPPTPTTPCPPTPTPPPPSQEKCPKDTLKLGACADLLGLVNIIIGTPPSSKCCALIKGLADLEAALCLCTAIKANVLGINLNVPITLELILSACQKTVPPGFQCP* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2468 163 PRINTS Proline rich extensin signature 38 59 - -
Ahy8g2468 163 PRINTS Proline rich extensin signature 26 38 - -
Ahy8g2468 163 PRINTS Proline rich extensin signature 69 85 - -
Ahy8g2468 163 PANTHER - 53 163 - -
Ahy8g2468 163 PANTHER - 1 32 - -
Ahy8g2468 163 Gene3D - 76 163 IPR036312 -
Ahy8g2468 163 Pfam Hydrophobic seed protein 81 163 IPR027923 -
Ahy8g2468 163 SMART aai_6 81 162 IPR016140 -
Ahy8g2468 163 CDD HPS_like 80 162 IPR027923 -
Ahy8g2468 163 PANTHER LIPID TRANSFER PROTEIN 53 163 - -
Ahy8g2468 163 PANTHER LIPID TRANSFER PROTEIN 1 32 - -
Ahy8g2468 163 MobiDBLite consensus disorder prediction 28 80 - -
Ahy8g2468 163 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 84 163 IPR036312 -
Ahy8g2468 163 MobiDBLite consensus disorder prediction 24 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2468 Ahy-Chr8 47414253 47415592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g2468 69 163 Acyl Lipid Metabolism Gene Families AT4G22490 38.144 5.65e-16 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g2468 - - gmx:100526941 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2723 18 130633290 130634698 Ahy8g2468 8 47414253 47415592 hybridization
Ahy16g3142 16 147525135 147526212 Ahy8g2468 8 47414253 47415592 PCT
Ahy6g2441 6 108923777 108924148 Ahy8g2468 8 47414253 47415592 PCT
Ahy8g2468 8 47414253 47415592 Ahy16g3142 16 147525135 147526212 PCT
Ahy8g2468 8 47414253 47415592 Ahy6g2441 6 108923777 108924148 PCT