Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2723 ATGGCTTCAAACAAAGTCATTGCCACCATTTTGGTGCTCTCTCTCTTAGCCTACTCAACACTCACTCATGCCAATTGCCCACCAAAAAAAGCAACTCCACCACCTTCACCGCCGGTGACGCCGCCACCGTCACCAAAACCAACACCACCAACTCCGACTCCGTCTCCGAAAGTAACACCTCCAACTCCTACTCCGACACCACCAACTCCGACTCCGTCGCCGAAAGTAACACCTCCAACTCCTTCTACTCCATGTCCACCAACTCCAACTCCATCTCCACCATCCCAAGAAAAATGCCCTAAAGATACCCTAAAGTTAGGGGCTTGTGCTGACCTTTTAGGGCTTGTTAACATCATTATTGGGACTCCACCATCAAGCCAGTGTTGTGCATTGATTAAGGGTTTGGCTGATTTGGAAGCAGCACTTTGCCTTTGCACTGCAATTAAGGCCAATGTGCTTGGAATCAACTTGAATGTGCCTATCACACTTGAATTGATCCTTAGTGCATGCCAAAAAACTGTCCCTCCTGGCTTCCAATGTCCTTAA 546 0.4835 MASNKVIATILVLSLLAYSTLTHANCPPKKATPPPSPPVTPPPSPKPTPPTPTPSPKVTPPTPTPTPPTPTPSPKVTPPTPSTPCPPTPTPSPPSQEKCPKDTLKLGACADLLGLVNIIIGTPPSSQCCALIKGLADLEAALCLCTAIKANVLGINLNVPITLELILSACQKTVPPGFQCP* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2723 181 SMART aai_6 99 180 IPR016140 -
Ahy18g2723 181 MobiDBLite consensus disorder prediction 24 99 - -
Ahy18g2723 181 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 102 181 IPR036312 -
Ahy18g2723 181 PRINTS Proline rich extensin signature 26 38 - -
Ahy18g2723 181 PRINTS Proline rich extensin signature 38 59 - -
Ahy18g2723 181 PRINTS Proline rich extensin signature 61 77 - -
Ahy18g2723 181 PANTHER LIPID TRANSFER PROTEIN 71 181 - -
Ahy18g2723 181 CDD HPS_like 98 180 IPR027923 -
Ahy18g2723 181 Pfam Hydrophobic seed protein 99 181 IPR027923 -
Ahy18g2723 181 MobiDBLite consensus disorder prediction 28 96 - -
Ahy18g2723 181 Gene3D - 94 181 IPR036312 -
Ahy18g2723 181 PANTHER - 71 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2723 Ahy-Chr18 130633290 130634698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2723 87 181 Acyl Lipid Metabolism Gene Families AT4G22490 39.175 9.65e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2723 - - gmx:100526941 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2723 18 130633290 130634698 Ahy18g2723 18 130633290 130634698 ECH
Ahy18g2723 18 130633290 130634698 Ahy8g2468 8 47414253 47415592 hybridization
Ahy16g3142 16 147525135 147526212 Ahy18g2723 18 130633290 130634698 PCT
Ahy6g2441 6 108923777 108924148 Ahy18g2723 18 130633290 130634698 PCT
Ahy18g2723 18 130633290 130634698 Ahy16g3142 16 147525135 147526212 PCT
Ahy18g2723 18 130633290 130634698 Ahy6g2441 6 108923777 108924148 PCT