LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy7g0675	ATGGGGGATAATTTGGAAAAAGGGCAGGATTACGAACAGAAAGCAGAGAAGAAGCTCGGTGGTTGGGGATTGTTTGGTTCCAAATTCGACGATGCTGCAGACCTATTCGAAAGAGCCGCTAATTGCTACAAGCTCGCAAAATCTTGGGATAAAGCAGGAGCCACCTATGTGAAGTTGGCAAATTGCCATATCAAGTTGGATAGCAAACATGAAGCTGCCGGTGCCTATGTTGATGCAGCACATAGTTACAAAAAAGTTAATATAAGTGAGGCTGTATCTTGCTTAGACCAAGCTGTAAATCTTTTCTGTGAAATTGGAAGAATCACTATGGCAGCTAAATATTTGAAGGAAATTGCGGAGTTGTATGAATCTGAACAGAACATTGAGCAGGCCATTGCTTACTATGAAAAGTCTGCTGACTTTTATGAAAATGAAGAAGGGACAACTTCTGCAAACCAGTGCAAGGCAAAAGTTGCTCAATTTGCTTCTCAACTAGAACAATACCAGAAGGCAATTGAGATTTACGAAGACATAGCACGCCAATCTCTCAACAATAATTTGCTGAAATATGGAGCTAGAGGGCATCTTCTTAATGCCGGCATTTGCCAACTTTGCAAGGGAGACGTTGTCGCTATCACCAATGCGTTGGAGCGATATCAGGAGATGGATCCAACATTTGGAGGCACACGTGAATATAGACTATTGGCGAATATTGCTTCCGCGATGGATGAAGAAGATGTCACAAAATTTACCGAAGTTATCAAGGAATTCGATAGCATGAGCCCTCTGGATTCATTGAAGACAACGCTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTAA	870	0.4184	MGDNLEKGQDYEQKAEKKLGGWGLFGSKFDDAADLFERAANCYKLAKSWDKAGATYVKLANCHIKLDSKHEAAGAYVDAAHSYKKVNISEAVSCLDQAVNLFCEIGRITMAAKYLKEIAELYESEQNIEQAIAYYEKSADFYENEEGTTSANQCKAKVAQFASQLEQYQKAIEIYEDIARQSLNNNLLKYGARGHLLNAGICQLCKGDVVAITNALERYQEMDPTFGGTREYRLLANIASAMDEEDVTKFTEVIKEFDSMSPLDSLKTTLLLRVKEKLKAKELEEDDLT*	290

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy7g0675	289	CDD	SNAP	7	278	IPR000744	GO:0006886
	Ahy7g0675	289	PANTHER	SOLUBLE NSF ATTACHMENT PROTEIN SNAP	1	289	IPR000744	GO:0006886
	Ahy7g0675	289	Pfam	Soluble NSF attachment protein, SNAP	7	278	-	-
	Ahy7g0675	289	SUPERFAMILY	TPR-like	6	280	IPR011990	GO:0005515
	Ahy7g0675	289	PANTHER	ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN	1	289	-	-
	Ahy7g0675	289	Coils	Coil	151	185	-	-
	Ahy7g0675	289	Gene3D	Tetratricopeptide repeat domain	6	288	IPR011990	GO:0005515
	Ahy7g0675	289	ProSiteProfiles	TPR repeat profile.	112	145	IPR019734	GO:0005515
	Ahy7g0675	289	PRINTS	NSF attachment protein signature	255	275	IPR000744	GO:0006886
	Ahy7g0675	289	PRINTS	NSF attachment protein signature	28	47	IPR000744	GO:0006886
	Ahy7g0675	289	PRINTS	NSF attachment protein signature	119	136	IPR000744	GO:0006886
	Ahy7g0675	289	PRINTS	NSF attachment protein signature	152	175	IPR000744	GO:0006886
	Ahy7g0675	289	PRINTS	NSF attachment protein signature	91	108	IPR000744	GO:0006886
	Ahy7g0675	289	PRINTS	NSF attachment protein signature	224	244	IPR000744	GO:0006886
	Ahy7g0675	289	PRINTS	NSF attachment protein signature	183	202	IPR000744	GO:0006886

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy7g0675	Ahy-Chr7	7688405	7696637	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy7g0675	K15296		-	gmx:100812517	464.151

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy17g0848	17	9797875	9806006	Ahy7g0675	7	7688405	7696637	hybridization
	Ahy20g1283	20	25449742	25454446	Ahy7g0675	7	7688405	7696637	PCT
	Ahy10g0949	10	17490798	17495550	Ahy7g0675	7	7688405	7696637	PCT
	Ahy7g0675	7	7688405	7696637	Ahy20g1283	20	25449742	25454446	PCT
	Ahy7g0675	7	7688405	7696637	Ahy10g0949	10	17490798	17495550	PCT