Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1283 ATGGCGGATCAATTATCGAAGGCAGAAGAATACGAGAAGAAAGCAGAGAAGAAGCTGAATGGTTGGGGCTTGTTTGGCTCCAAATATGAGGATGCTGCTGATCTCTTCGATAAAGCTGCCAATTCCTTCAAGCTCGCTAAATCATGGGACAAAGCGGGAGCAACATACCTCAGGTTGGCAAGTTGCCATTTGAAGTTGGAAAGTAAACATGAAGCTGCCCAAGCCTATGTCGATGCCGCTCATTGCTATAAAAAGACTAATATAAATGAGGCTGTAAATTGCTTGGACCATGCTGTGAATCTATTCTGTGATATTGGAAGACTCTCCATGGCTGCTAGATATTTGAAGGAAATTGCTGAATTGTACGAGTCTCAACAGAATATTGAGCAGGCTGTTGTTTACTACGAAAAATCAGCTGATTTTTTCCAAAATGAAGAAGTTACAACTAGTGCAAACCAGTGCAAGCAAAAGGTTGCTCAATATGCTGCCCAGCTAGAACAATATCAAAAATCAATTGACATTTATGAAGCCATAGCTCGCCAGTCTCTCAACAATAACTTGCTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGCATTTGCGAACTCTGTAAAGGGGATCTCGTTGCTATAAACAATGCACTAGAGAGATATCAGGAGCTGGATCCAACATTTTCAGGAACACGTGAATATAGATTTTTGACGGATATTGCTTCTGCAATTGAAGAAGAAGATGTTGGACACTTTACTACCATTGTCAAGGAATTTGATAGCATGACCCCTCTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTAAAGGAAAAGCTGAAGGCCAAAGAACTTGAGGAGGACGATCTTACTTAA 870 0.408 MADQLSKAEEYEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYLRLASCHLKLESKHEAAQAYVDAAHCYKKTNINEAVNCLDHAVNLFCDIGRLSMAARYLKEIAELYESQQNIEQAVVYYEKSADFFQNEEVTTSANQCKQKVAQYAAQLEQYQKSIDIYEAIARQSLNNNLLKYGVKGHLLNAGICELCKGDLVAINNALERYQELDPTFSGTREYRFLTDIASAIEEEDVGHFTTIVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1283 289 Coils Coil 151 178 - -
Ahy20g1283 289 Pfam Soluble NSF attachment protein, SNAP 6 278 - -
Ahy20g1283 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Ahy20g1283 289 CDD SNAP 19 278 IPR000744 GO:0006886
Ahy20g1283 289 SMART tpr_5 112 145 IPR019734 GO:0005515
Ahy20g1283 289 SMART tpr_5 53 86 IPR019734 GO:0005515
Ahy20g1283 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Ahy20g1283 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Ahy20g1283 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Ahy20g1283 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Ahy20g1283 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Ahy20g1283 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Ahy20g1283 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Ahy20g1283 289 Gene3D Tetratricopeptide repeat domain 4 288 IPR011990 GO:0005515
Ahy20g1283 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Ahy20g1283 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1283 Ahy-Chr20 25449742 25454446 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1283 K15296 - gmx:100814639 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0848 17 9797875 9806006 Ahy20g1283 20 25449742 25454446 ECH
Ahy20g1283 20 25449742 25454446 Ahy20g1283 20 25449742 25454446 ECH
Ahy20g1283 20 25449742 25454446 Ahy10g0949 10 17490798 17495550 hybridization
Ahy20g1283 20 25449742 25454446 Ahy17g0848 17 9797875 9806006 PCT
Ahy20g1283 20 25449742 25454446 Ahy7g0675 7 7688405 7696637 PCT
Ahy17g0848 17 9797875 9806006 Ahy20g1283 20 25449742 25454446 PCT
Ahy7g0675 7 7688405 7696637 Ahy20g1283 20 25449742 25454446 PCT