Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0949 ATGGCGGATCAATTATCGAAGGCAGAAGAATACGAGAAGAAAGCAGAGAAGAAGCTGAATGGTTGGGGCTTGTTTGGCTCCAAATATGAGGATGCTGCTGATCTCTTCGATAAAGCTGCCAATTCCTTCAAGCTCGCTAAATCATGGGACAAAGCGGGAGCAACATACCTCAGGTTGGCAAGTTGCCATTTGAAGTTGGAAAGTAAACATGAAGCTGCCCAAGCCTATGTCGATGCTGCTCATTGCTATAAAAAGACTAATATAAATGAGGCTGTAAATTGCCTGGACCATGCTGTGAATCTATTCTGTGATATTGGAAGACTCTCCATGGCTGCTAGATATTTGAAGGAAATTGCTGAATTGTACGAGTCTCAACAGAATATTGAGCAGGCTGTTGTTTACTATGAAAAATCAGCTGATTTTTTCCAAAATGAAGAAGTTACAACTAGTGCAAACCAGTGCAAGCAAAAGGTTGCTCAATATGCTGCCCAGCTAGAACAATATCAAAAATCAATTGACATTTATGAAGCCATAGCTCGCCAGTCTCTCAACAATAACTTGCTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGTATTTGCGAACTCTGTAAAGGGGATCTCGTTGCTATAAACAATGCACTAGAGAGATATCAGGAGCTGGATCCAACATTTTCAGGAACACGAGAATATAGATTTTTGACGGATATTGCTTCTGCAATTGAAGAAGAAGATGTTGGACATTTTACTACCATTGTCAAGGAATTTGATAGCATGACCCCTCTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTAAAGGAAAAGCTGAAGGCCAAAGAACTTGAGGAGGACGATCTTACTTAA 870 0.4046 MADQLSKAEEYEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYLRLASCHLKLESKHEAAQAYVDAAHCYKKTNINEAVNCLDHAVNLFCDIGRLSMAARYLKEIAELYESQQNIEQAVVYYEKSADFFQNEEVTTSANQCKQKVAQYAAQLEQYQKSIDIYEAIARQSLNNNLLKYGVKGHLLNAGICELCKGDLVAINNALERYQELDPTFSGTREYRFLTDIASAIEEEDVGHFTTIVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0949 289 Coils Coil 151 178 - -
Ahy10g0949 289 Pfam Soluble NSF attachment protein, SNAP 6 278 - -
Ahy10g0949 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Ahy10g0949 289 CDD SNAP 19 278 IPR000744 GO:0006886
Ahy10g0949 289 SMART tpr_5 112 145 IPR019734 GO:0005515
Ahy10g0949 289 SMART tpr_5 53 86 IPR019734 GO:0005515
Ahy10g0949 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Ahy10g0949 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Ahy10g0949 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Ahy10g0949 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Ahy10g0949 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Ahy10g0949 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Ahy10g0949 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Ahy10g0949 289 Gene3D Tetratricopeptide repeat domain 4 288 IPR011990 GO:0005515
Ahy10g0949 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Ahy10g0949 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0949 Ahy-Chr10 17490798 17495550 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0949 K15296 - gmx:100814639 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1283 20 25449742 25454446 Ahy10g0949 10 17490798 17495550 hybridization
Ahy10g0949 10 17490798 17495550 Ahy17g0848 17 9797875 9806006 PCT
Ahy10g0949 10 17490798 17495550 Ahy7g0675 7 7688405 7696637 PCT
Ahy17g0848 17 9797875 9806006 Ahy10g0949 10 17490798 17495550 PCT
Ahy7g0675 7 7688405 7696637 Ahy10g0949 10 17490798 17495550 PCT