Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1536 ATGACGCATTACTCTCAAAAGTTTTATATTTTGTTATGTATGATCTCTAATCGTGTGTTAGTCTTGGATTTGTTGTTCAGATTGTACTTTACAAAAGTGAAGATGGGTTCTCCTCCTAAGGAATTTAATGTCCAGATTGATACTGGGAGTGACATCTTGTGGGTTAATTGCAACAGATGCAGTAATTGTCCACAGTCTAGCGGGCTGGGGATCCAGCTCAATTTCTTTGATGCAGCCAGCTCATCCACTGCTGCACTGGTTTCCTGCTCGGACCCGATATGCACTTATGCGGTTCAAACTGCAACAAGTGAATGCTCCTCTCAGGTTAACCAGTGCAGCTACACCTTTCAGTATGGAGATGGAAGTGGCACAACCGGATATTATGTTTCCGATGCTATCTATCTTGACACGATTGTGGGACAATCTGTGCTTTCTAACTCATCATCTACCATCGTTTTTGGGTGTAGCACCTATCAATCTGGAGATTTGACTAAGACAGAAAAAGCAGTTGACGGAATTTTTGGATTTGGACCTGGTGCTCTATCTGTTATATCGCAGTTGTCATCGAAAGGCATGACCCCCAAAGTTTTCTCGCATTGCTTAAAAGGAGATGGCAATGGAGGAGGCATACTAGTTCTTGGTGAGATATTGGAGCCTGGCATTGTTTATACTCCACTTGTCCCATCACAGCCCCATTACAACTTAAATCTTGAGAGTATTGCTGTCAACGGACAGCTCCTCTCAATTGATCCAGCTGCATTTGGAACATCTAACAATCGGGGAACCATAGTTGACTCTGGTACAACATTGGCATACCTTATTCAAGAAGCTTATGATCCATTTGTCAATGCTATAACTACAATTGTGTCACAGTTTGCCAGACCCATTATTTCTAAAGGAAACCAGTGCTATCTGGTCCCAACCAGCATAGGTGATATATTTCCTTCAGTCACTTTAAACTTTATTGGTGGAGCATCCATGGTTCTGAAACCAGAACAATACCTTATGCATTATGGTTTTCTTGATGGTGCTGCAATGTGGTGCATGGGTTTCCAGAAAGTGCAGGAGGGATTCACAATTTTAGGAGATCTTGTGCTGAAAGATAAGATTTTTGTATATGACTTGGCTAATGAGCGTATTGGATGGACAAACTATGACTGTTCCTTATCAGTAAACGTCTCAGTGGCTGCAACCAAGAGCAAAGATCAGTACATCAATGCAGGAACGCCGAGTGTCAGCAGCTCCCTCATAGGCCATGTGTACAAGTTACTACCTGTAAGCATTGTGGTTCTCCTTGTCCACATGATAGTTTCCATGGTGCCCCCAATTTCGTGA 1335 0.4262 MTHYSQKFYILLCMISNRVLVLDLLFRLYFTKVKMGSPPKEFNVQIDTGSDILWVNCNRCSNCPQSSGLGIQLNFFDAASSSTAALVSCSDPICTYAVQTATSECSSQVNQCSYTFQYGDGSGTTGYYVSDAIYLDTIVGQSVLSNSSSTIVFGCSTYQSGDLTKTEKAVDGIFGFGPGALSVISQLSSKGMTPKVFSHCLKGDGNGGGILVLGEILEPGIVYTPLVPSQPHYNLNLESIAVNGQLLSIDPAAFGTSNNRGTIVDSGTTLAYLIQEAYDPFVNAITTIVSQFARPIISKGNQCYLVPTSIGDIFPSVTLNFIGGASMVLKPEQYLMHYGFLDGAAMWCMGFQKVQEGFTILGDLVLKDKIFVYDLANERIGWTNYDCSLSVNVSVAATKSKDQYINAGTPSVSSSLIGHVYKLLPVSIVVLLVHMIVSMVPPIS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1536 444 Pfam Xylanase inhibitor C-terminal 232 383 IPR032799 -
Ahy6g1536 444 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 26 406 - -
Ahy6g1536 444 Pfam Xylanase inhibitor N-terminal 29 214 IPR032861 -
Ahy6g1536 444 PRINTS Pepsin (A1) aspartic protease family signature 359 374 IPR001461 GO:0004190|GO:0006508
Ahy6g1536 444 PRINTS Pepsin (A1) aspartic protease family signature 262 273 IPR001461 GO:0004190|GO:0006508
Ahy6g1536 444 PRINTS Pepsin (A1) aspartic protease family signature 35 55 IPR001461 GO:0004190|GO:0006508
Ahy6g1536 444 PANTHER ASPARTYL PROTEASES 26 406 IPR001461 GO:0004190|GO:0006508
Ahy6g1536 444 Gene3D Acid Proteases 22 215 IPR021109 -
Ahy6g1536 444 Gene3D Acid Proteases 216 393 IPR021109 -
Ahy6g1536 444 ProSiteProfiles Peptidase family A1 domain profile. 29 383 IPR033121 -
Ahy6g1536 444 CDD pepsin_A_like_plant 29 387 IPR034161 -
Ahy6g1536 444 SUPERFAMILY Acid proteases 21 390 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1536 Ahy-Chr6 53215623 53219378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1536 29 388 Miscellaneous Gene Families AT1G44130 28.272 3.86e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1536 - - gmx:100804147 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1721 16 65874438 65878649 Ahy6g1536 6 53215623 53219378 hybridization
Ahy6g1536 6 53215623 53219378 Ahy12g3003 12 119635156 119639426 PCT
Ahy6g1536 6 53215623 53219378 Ahy2g2588 2 102037231 102041501 PCT
Ahy12g3003 12 119635156 119639426 Ahy6g1536 6 53215623 53219378 PCT
Ahy2g2588 2 102037231 102041501 Ahy6g1536 6 53215623 53219378 PCT