Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g3003 ATGCGGTGTTCTCTTACAGCGGTGGTTTTCGTTCTGGCCACCGTGGTGGCGGCGGTGGTGGATGCCGGCGTATTGCTTCCCTTGGAACGCGCGGTTCCAACTACTGGCAGCAGGCGCGTGGATGTGGAGTATCTGAGGGCGCGTGACAGAGCGCGTCATGCTCGAATCCTGCGTGGTTCTGGTGGTGGCGGTTATGGTGGTGGTGGCGTAGTTGATTTCTCAGTACAAGGAACCTCCGATCTTAGCTCAGCTGGGTTGTATTTTACCAAGGTGAAGATGGGAACACCTCCAAAAGAATTTAATGTGCAGATTGATACCGGAAGTGACATCTTGTGGGTTAGCTGCAATACTTGCAGCAATTGCCCTCAATCTAGTGGACTTGGGATTGAGCTCAATTACTTTGACACGGTTGGCTCATCCACAGCTGCGCTGGTTCCATGCTCAGACTCGATATGTGCTTCTGAGGTTCAAGGTGCAGCTGCTGAATGTTCTCAGGCTAATCAGTGCAGCTATACATTTCAGTATGGAGATGGAAGTGGAACGACAGGATATTATGTTTCTGATGCAATCTATTTTGATATGATCCTGGGACAGTCTTCACTTGCTAACTCTTCAGCGACTGTTGTTTTTGGGTGTAGCAACTATTTGTCTGGAGAATTGACTAAATCAGATAAAGCAGTTGATGGAATTATTGGGTTTGGCCCTGGTCCTCTATCTGTTGTATCACAATTGTCTTCGCGTGGTATAACACCCAAAGTTTTCTCTCATTGTTTAAAAGGAGATGGCAATGGAGGAGGCATACTAGTTCTTGGTCATATTTTGGATCCAAATATAGTTTATACTCCACTGCTTCCATCACAACCTCATTACAACGTAAACCTCCAGGGCATTTCTGTCAATGGACAACCCCTCTCAATTAATGCAGATGTATTTGCAACATCTGCCAATCGAGGAACTATAGTCGACTCCGGTACAACATTGGCATATCTTATTCAAGAGGCTTATGATCCTCTCGTCAATGCAATTACTACAGCAGTGTCACAGTCTACAAATCCTTTTATTTCAAAAGGACTTCAGTGTTATCTTCTCTCAACCAGTATAAGTGATATATTTCCTCAAGTCAGCTTAAACTTTGAGGGTGGGGCATCAATGGTTTTAAAACCAGAACAGTACCTTATGCATAATGGTGTCATGGATGGTCAGTCATTGTGGTGCATCGGTTTCGAGAAAGTGCAGGAGGGAGTCTCAATTTTAGGAGATCTGGTTTTAAAAGATAAGGTAATCATCTATGACTTAGCACATCAACAAATCGGATGGGCCAACTATGACTGTTCCTCCCCTGTAAACGTTTCTGTGGCTACAAGCAAGGATGAGTACATCAATGCCAGACAAACGAGTGTCAGCGGTGCAGATATAGGCATCCTCTCCAAGTTATTACCTGTAAGCATTGTGGCTCTCTCTGTGCACATAGCAATTTTCGCTCCATTTTTGTAA 1494 0.4478 MRCSLTAVVFVLATVVAAVVDAGVLLPLERAVPTTGSRRVDVEYLRARDRARHARILRGSGGGGYGGGGVVDFSVQGTSDLSSAGLYFTKVKMGTPPKEFNVQIDTGSDILWVSCNTCSNCPQSSGLGIELNYFDTVGSSTAALVPCSDSICASEVQGAAAECSQANQCSYTFQYGDGSGTTGYYVSDAIYFDMILGQSSLANSSATVVFGCSNYLSGELTKSDKAVDGIIGFGPGPLSVVSQLSSRGITPKVFSHCLKGDGNGGGILVLGHILDPNIVYTPLLPSQPHYNVNLQGISVNGQPLSINADVFATSANRGTIVDSGTTLAYLIQEAYDPLVNAITTAVSQSTNPFISKGLQCYLLSTSISDIFPQVSLNFEGGASMVLKPEQYLMHNGVMDGQSLWCIGFEKVQEGVSILGDLVLKDKVIIYDLAHQQIGWANYDCSSPVNVSVATSKDEYINARQTSVSGADIGILSKLLPVSIVALSVHIAIFAPFL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g3003 497 CDD pepsin_A_like_plant 87 444 IPR034161 -
Ahy12g3003 497 ProSiteProfiles Peptidase family A1 domain profile. 87 440 IPR033121 -
Ahy12g3003 497 Gene3D Acid Proteases 273 451 IPR021109 -
Ahy12g3003 497 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 462 - -
Ahy12g3003 497 Coils Coil 497 497 - -
Ahy12g3003 497 Pfam Xylanase inhibitor N-terminal 87 272 IPR032861 -
Ahy12g3003 497 Pfam Xylanase inhibitor C-terminal 289 440 IPR032799 -
Ahy12g3003 497 Gene3D Acid Proteases 71 272 IPR021109 -
Ahy12g3003 497 SUPERFAMILY Acid proteases 84 447 IPR021109 -
Ahy12g3003 497 PANTHER ASPARTYL PROTEASES 9 462 IPR001461 GO:0004190|GO:0006508
Ahy12g3003 497 PRINTS Pepsin (A1) aspartic protease family signature 319 330 IPR001461 GO:0004190|GO:0006508
Ahy12g3003 497 PRINTS Pepsin (A1) aspartic protease family signature 416 431 IPR001461 GO:0004190|GO:0006508
Ahy12g3003 497 PRINTS Pepsin (A1) aspartic protease family signature 93 113 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g3003 Ahy-Chr12 119635156 119639426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g3003 85 446 Miscellaneous Gene Families AT1G44130 28.534 1.91e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g3003 - - gmx:100820394 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3003 12 119635156 119639426 Ahy12g3003 12 119635156 119639426 ECH
Ahy12g3003 12 119635156 119639426 Ahy2g2588 2 102037231 102041501 hybridization
Ahy16g1721 16 65874438 65878649 Ahy12g3003 12 119635156 119639426 PCT
Ahy6g1536 6 53215623 53219378 Ahy12g3003 12 119635156 119639426 PCT
Ahy12g3003 12 119635156 119639426 Ahy16g1721 16 65874438 65878649 PCT
Ahy12g3003 12 119635156 119639426 Ahy6g1536 6 53215623 53219378 PCT