Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1156 ATGCACGTGGCGATCATCCCCTTTCTCTGGTCGTTGCCTTTAAATAATTCAACACCTTCTGATCTTCACCTTATCCTCTTTCTCATTTCTGCACAAAATCCACCACCACACGCAAAAAAACGAAAAAGACAAACACAAAAACTCTGCCTCGCCGCCGGCGAAACACTCGCCGGAAAACCCGAACAAGTAGCCGTGAGATATGGAAGCTGTGTTGATGGCTCACGACCCCGATGTGTTGAGAAAGAGCCTGACGTTATCGTCGCGTTGCTTGTTGGGGAACCGCAATCGTATATGATTCAGCCGATTGATTCTGACGTTTGTGAAGAGACGAGGAGGCTGGAGTTGGTGAAGCCGGTGGCCAAGTGGCGGTTGAAGCGGCTCTTCGAGCGCCAGTTCCCCGGCGTTCTGAGGAGCTCGGCGGCGGCGGTGGAGAAGACCGCCGGCGACGATGCGCATTTCGGCAAAGACGTAGCTGGTGCCGATTTGGAACCGAACTCTGTGTGTCTGGCGAGAATGGTGCAGAGTTTCATGGAAGATAATCACGATAATAAGCACTCGGTTTCCGTTAAGTGTTCCCGTAACCGCTGTAACTGCTTCAACGGCAACTGCGACGACAACTCCGACGGTGAATCGGACGCCGGTTTCGGAGAAACTAACCAGCCTTCCTCCAGCGAAGCTCTCGAAATCCTCAAGGGTTTGGTGGCGTGTGGCAGCAAGAGCGAGAGGAATCTGTTAGCGGACACAGCGAAGATAGTTGAGAAGAACAAGATAATCTGCAAACGCAAAGACGGCGATTGCAGAAAGCTCGTCACGGAGGCTTTGTTAGCTCTTGGCTACGATGCTGCAATCTGCAAATCTCGCTGGGAGAAAACTCCTTTCTATCCCGCTGGGGAATACGAGTACATTGACGTGATAATTGGGAACGAGAGGGTGGTGGTTGACGTTGATTTCAGATCGGAGTTCGAGATTGCTCGCCCGACCAAGGCGTACAAGGCGATCCTTCAAACTGTTCCGTACATATTCGTTGGCAAGTGTGAGCGGTTGCAGAGTATGGTGGCGATTGTGTCCGAGGCGGCGAAGCAGAGCTTGAAGAAGAAGGGAATGCCGGTTCCGCCGTGGAGGAAGGTCGAATACGTCAGAGCGAAATGGCTCTCCCCTCACACGCGAGTTTTTCCCCCTTCCTCCTCGCAAGGGATCAAAAACAACGCGGAGGAAAACCAGGTTTTGGCCGGCGGCGCCGGCGAGTTTAAAGTGAGTCGTTGCGAGTCGGATGAGTCTAATATTGTGATCCAATCCAAACCACCGGAGATAAAGGCTAAGAGCTCGCTCTCTGCTTTGGCTGCTGTGTTAAATGAAACCCCATAA 1365 0.5238 MHVAIIPFLWSLPLNNSTPSDLHLILFLISAQNPPPHAKKRKRQTQKLCLAAGETLAGKPEQVAVRYGSCVDGSRPRCVEKEPDVIVALLVGEPQSYMIQPIDSDVCEETRRLELVKPVAKWRLKRLFERQFPGVLRSSAAAVEKTAGDDAHFGKDVAGADLEPNSVCLARMVQSFMEDNHDNKHSVSVKCSRNRCNCFNGNCDDNSDGESDAGFGETNQPSSSEALEILKGLVACGSKSERNLLADTAKIVEKNKIICKRKDGDCRKLVTEALLALGYDAAICKSRWEKTPFYPAGEYEYIDVIIGNERVVVDVDFRSEFEIARPTKAYKAILQTVPYIFVGKCERLQSMVAIVSEAAKQSLKKKGMPVPPWRKVEYVRAKWLSPHTRVFPPSSSQGIKNNAEENQVLAGGAGEFKVSRCESDESNIVIQSKPPEIKAKSSLSALAAVLNETP* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1156 454 Pfam PDDEXK-like family of unknown function 171 389 IPR006502 -
Ahy6g1156 454 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 268 389 IPR006502 -
Ahy6g1156 454 PANTHER OS03G0796600 PROTEIN 116 447 IPR006502 -
Ahy6g1156 454 PANTHER RNA POLYMERASE SUBUNIT BETA-BETA PROTEIN, PUTATIVE (DUF506)-RELATED 116 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1156 Ahy-Chr6 16881268 16883605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1156 - - ahf:112754473 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0169 16 1785472 1787765 Ahy6g1156 6 16881268 16883605 hybridization
Ahy6g1156 6 16881268 16883605 Ahy12g0803 12 14495509 14497618 PCT
Ahy6g1156 6 16881268 16883605 Ahy2g0674 2 11058878 11061313 PCT
Ahy12g0803 12 14495509 14497618 Ahy6g1156 6 16881268 16883605 PCT
Ahy2g0674 2 11058878 11061313 Ahy6g1156 6 16881268 16883605 PCT