Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0169 ATGCACGTGGCGATCATCCCTTTTCTCTGGTCGTTGCCTTTAAATAATTCAACACCTTCTGATCTTCACCTTATCCTCTTTCGCATTTCTGCACAAAATCCACCACCACACGCAAAAAAACGAAAAAGACAAAAACAAAAACTCTGCTTCGCCGCCGGCGAAACACTCGCCGGAAAACCCGAACAAGTAGCCGTGAGATATGGAAGCTGTGTTGATGGCTCACGACCCCGATGTGTTGAGAAAGAGCCTGACGTTATCGTCGCGTTGCTTGTTGGGGAACCGCAATCGTATATGATTCAGCCGATTGATTCTGACGTTTGTGAAGAGACGAGGAGGCTGGAGTTGGTGAAGCCGGTGGCCAAGTGGCGGTTGAAGCGCCTCTTCGAGCGCCAGTTCCCCGGCGTTCTGAGGAGCTCGTCGGCGGCGGCGGTGGCGGTCGAGAAGATCGCCGGCGACGATGCGCATTTCGGCAAGGACGTAGCTGGTGCCGATTTGGAACCGAACTCCGTGTGTCTGGCGAGAATGGTGCAGAGTTTCATGGAAGATAATCACGATAATAAGCACCCGGTTTCCGTTAAGTGTTCCCGTAACCGCTGTAACTGCTTCAACGGCAACTGCGACGACAACTCCGACGGTGAATCGGACGCCGGTTTCGGAGAAACTAACCAGCCTCCCTCCGGCGAAGCTCTCGAAATCCTCAAGGGTTTGGTGGCGTGTGGGAGCAAGAGCGAGAGGAATCTGTTAGCGGACACAGCGAAGATAGTTGAGAAGAACAAGATAATCTGTAAACGCAAAGACGGCGATTGCAGAAAGCTCGTCACGGAGGCTTTGTTAGCTCTTGGCTACGATGCTGCAATCTGCAAATCTCGCTGGGAGAAAACTCCTTTCTATCCCGCTGGGGAATACGAGTACATTGATGTGATAATTGGGAACGAGAGAGTGGTGGTTGACGTTGATTTCAGATCGGAGTTCGAGATTGCTCGCCCGACCAAGGCGTACAAGGCGATCCTTCAAACTGTTCCGTACATATTCGTTGGCAAGTGTGAGCGGTTGCAGAGTATGGTGGCGATTGTGTCGGAGGCGGCGAAGCAGAGCTTGAAGAAGAAGGGAATGCCGGTTCCGCCGTGGAGGAAGGTCGAATACGTCAGAGCGAAATGGCTCTCCCCTCACACGCGAGTTTTTCCGCCTTCCTCCTCGCAAGGGATCAAAAACAACGCGGAGGAAAACCAGGTTTTGGCCGGCGGCGCCGGCGAGTTTAAAGTGAGTCGTGGCGAGTCGGATGAGTCTAATATTGTGATCCAATCCAAACCACCGGAGATAAAGGCCAAGAGCTCGCTCTCTGCTTTGGCTGCTGTGTTAAATGAAACCCCATAA 1374 0.5262 MHVAIIPFLWSLPLNNSTPSDLHLILFRISAQNPPPHAKKRKRQKQKLCFAAGETLAGKPEQVAVRYGSCVDGSRPRCVEKEPDVIVALLVGEPQSYMIQPIDSDVCEETRRLELVKPVAKWRLKRLFERQFPGVLRSSSAAAVAVEKIAGDDAHFGKDVAGADLEPNSVCLARMVQSFMEDNHDNKHPVSVKCSRNRCNCFNGNCDDNSDGESDAGFGETNQPPSGEALEILKGLVACGSKSERNLLADTAKIVEKNKIICKRKDGDCRKLVTEALLALGYDAAICKSRWEKTPFYPAGEYEYIDVIIGNERVVVDVDFRSEFEIARPTKAYKAILQTVPYIFVGKCERLQSMVAIVSEAAKQSLKKKGMPVPPWRKVEYVRAKWLSPHTRVFPPSSSQGIKNNAEENQVLAGGAGEFKVSRGESDESNIVIQSKPPEIKAKSSLSALAAVLNETP* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0169 457 Pfam PDDEXK-like family of unknown function 174 392 IPR006502 -
Ahy16g0169 457 PANTHER RNA POLYMERASE SUBUNIT BETA-BETA PROTEIN, PUTATIVE (DUF506)-RELATED 116 450 - -
Ahy16g0169 457 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 271 392 IPR006502 -
Ahy16g0169 457 PANTHER OS03G0796600 PROTEIN 116 450 IPR006502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0169 Ahy-Chr16 1785472 1787765 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0169 - - ahf:112754473 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0169 16 1785472 1787765 Ahy6g1156 6 16881268 16883605 hybridization
Ahy16g0169 16 1785472 1787765 Ahy12g0803 12 14495509 14497618 PCT
Ahy16g0169 16 1785472 1787765 Ahy2g0674 2 11058878 11061313 PCT
Ahy12g0803 12 14495509 14497618 Ahy16g0169 16 1785472 1787765 PCT
Ahy2g0674 2 11058878 11061313 Ahy16g0169 16 1785472 1787765 PCT