Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0547 ATGAGGAGAACTTCTACACTTGTGGGTGTGCTTCTGGTACTTACATTAATCAGCTGTGGCCCATGGAGAGTGTGGAGCAGCTCACTTTGCAAGCAGACAAATTTGGAGGTTAGACCTCACAGCGTTAGTATTACAGAATTTGGCGCAGTTGGAGACGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCAATATTTTACCTTAATTCATTTGCAGACAAAGGCGGAGCGAAGCTCTTTGTCCCGGCTGGCCGTTGGTTGACCGGTAGTTTTGATCTCATCAGCCATCTAACTCTCTGGTTGGACAAAGATGCTGTAATTCTTGGATCCACAAACCCTGATGATTGGCCAGTTGTTGATCCTCTACCGTCATATGGGCGAGGAAGGGAGTTGCCGGGTGGAAGGCACAAGAGCCTCATTTATGGACAAGATTTGACTGATGTTGTTATAACAGGTAACAATGGAACAATTGATGGTCAAGGGAGTATTTGGTGGAGCCTGTTTAGGAACAAAACCTTGGATTATACGCGTCCCCATTTGGTAGAATTGATGAACTCGGCGGGGGTTCTCATCTCGAATTTAACCTTCTTAGATTCTCCATTTTGGAATATACATCCTGTATATTGCAGCCAAGTTACAGTTAAGAAAGTCAAGATCCTTGCTCCTCTTGATTCTCCAAACACGGATGGGATTGATCCAGATTCTTCCGACAATGTATGCATTGAAGACTGTTATATAAGCACGGGTGATGATCTGATTGCCATCAAAAGTGGCTGGGACGAGTATGGCATAGCGTTCGGCCGTCCCAGCACAAACATTATCATCAACAGGCTCACCGGGAGGACGGCGACGAGTGCAGGGATTGCCATTGGAAGTGAGATGTCTGGTGGTGTATCAGAAGTCCATGCCCAAGACATTCGCTTCTTCGATTCGTACAGCGCCATCAGAATAAAGACTTCTCCAGGGAGAGGTGGTTATGTTAGAAATGTCTTTGTTTCTAACATGACTTTAGAAAATGTTGACATTGCTATCAGGTTCACTGGTACATATGGGGATCATCCTGATGATAAATTTGATCCAAATGCATTACCTTTGATAGAAAAGATTACAATCAAGGATGTGATTGGCCAAAACATCAAGCGCGCCGGCCTTCTAGAAGGCATAGAAGGAGACAACTTTGTAAACATCTGTCTATCAAACATCATCCTTAATGTGAGCTCAAGCTATTCATGGAACTGCTCTAATGTCCAAGGATATTCCGATTTCGTTTCGCCGGAAGCTTGCAAGCCTCTCAAGGAGAGAATATTCCCAGAGCATTGTTCAGACTGTTACAATTTATCCAATCACCTGCAAAGTTCAAATAATCAAACAAGAGGACAAATTTCAGGTGACATACAATGTTGA 1404 0.438 MRRTSTLVGVLLVLTLISCGPWRVWSSSLCKQTNLEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPDDWPVVDPLPSYGRGRELPGGRHKSLIYGQDLTDVVITGNNGTIDGQGSIWWSLFRNKTLDYTRPHLVELMNSAGVLISNLTFLDSPFWNIHPVYCSQVTVKKVKILAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIINRLTGRTATSAGIAIGSEMSGGVSEVHAQDIRFFDSYSAIRIKTSPGRGGYVRNVFVSNMTLENVDIAIRFTGTYGDHPDDKFDPNALPLIEKITIKDVIGQNIKRAGLLEGIEGDNFVNICLSNIILNVSSSYSWNCSNVQGYSDFVSPEACKPLKERIFPEHCSDCYNLSNHLQSSNNQTRGQISGDIQC* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0547 467 Pfam Glycosyl hydrolases family 28 137 417 IPR000743 GO:0004650|GO:0005975
Ahy6g0547 467 PANTHER OS07G0245200 PROTEIN 8 451 - -
Ahy6g0547 467 PANTHER PECTIN LYASE-RELATED 8 451 - -
Ahy6g0547 467 Gene3D - 27 422 IPR012334 -
Ahy6g0547 467 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Ahy6g0547 467 SUPERFAMILY Pectin lyase-like 35 431 IPR011050 -
Ahy6g0547 467 SMART pbh1 270 292 IPR006626 -
Ahy6g0547 467 SMART pbh1 236 268 IPR006626 -
Ahy6g0547 467 SMART pbh1 327 348 IPR006626 -
Ahy6g0547 467 SMART pbh1 298 319 IPR006626 -
Ahy6g0547 467 SMART pbh1 209 235 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0547 Ahy-Chr6 6724790 6728477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0547 1 458 Glycoside Hydrolase AT3G62110 69.742 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0547 - - gmx:100782602 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0793 16 14206688 14210399 Ahy6g0547 6 6724790 6728477 hybridization
Ahy6g0547 6 6724790 6728477 Ahy19g1262 19 25099792 25103723 PCT
Ahy6g0547 6 6724790 6728477 Ahy9g0995 9 19566140 19570026 PCT
Ahy19g1262 19 25099792 25103723 Ahy6g0547 6 6724790 6728477 PCT
Ahy9g0995 9 19566140 19570026 Ahy6g0547 6 6724790 6728477 PCT