Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1262 ATGAAGAGACCTTCAGCTCTGGTGGATGTGTTTCTGGTACTTGCATTGTTTAGTTGCAACTCATGGACAACGCGGAGCAGCTCAGAAAGCTGCAATCCAAATTATGTTGAGGAAATTCGACCTCATAGTGTTAGTATTACTGAATTTGGAGCCGTTGGAGATGGAATCACTCTCAACACAAAAGCATTTCAGAATGCCATTTTCTACCTAAATTCTTTCGCAGACAAAGGCGGAGCAAAGCTTTTTGTCCCAGCTGGCCAATGGTTAACCGGAAGTTTTGATCTTATCAGCCACCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTCCGATGATTGGCCCATTGTGGATTCCCTACCCTCATATGGTCGAGGAAGGGAGTTGCCTGGTGGAAGGCATAAAAGCCTCATTTATGGTAACAATTTGACTGATGTTATCATTACAGGTAATAATGGAACTATAGATGGTCAAGGGAGAATCTGGTGGAGCAGGTTTCGGAACAAAACATTGGACTATACACGTCCCCATTTGGTTGAATTGATGAATTCATCTGGGATTCTCATTTCAAATTTAACTTTCTTGAATTCACCATTTTGGAATATTCACCCTGTATATTGCAGCCATGTTACAGTTCAAAATGTCACAATCCATGCTCCCTCCAGTTCTCCGAATACAGATGGGATAAATCCAGATTCTTCAGATGATATATGCATTGAAGATTGTTACATAAGCACCGGGGACGATCTGGTTGCCATCAAAAGTGGTTGGGATGAATATGGAATTTCGTTTGGTCGTCCTAGTACAAACATTGTCATCCGTAGGCTCGTTGGGAAAACAACAAGCGCAGGAATCGCTATTGGAAGTGAGATGTCTGGAGGTGTTTCAGGTGTTTTTGCAGAGGATATTTACATTTTTGATTCGCATACAGGGATTGGAATAAAGACTGCTCGCGGAAGGGGTGGTTATGTTCGAAATGTCTATATCTCAAAAATGACATTGGATAATGTAGATATTGCTATTAGGCTCAATGGCTTATACAAAGAACATCCTGATGATGATTACAACCCAGATGCTTTGCCTGTAATAGAAAAGATTACTATCAAGGATGTGATAGGAGAAAATATCAAACGCGCAGGCCTTATACAAGGTATAAAAGGTGACAATTTTGTCGACATTTGCCTATCAAATATCACACTTAGTGTGAGCTCAAAAACTCCATGGAACTGCTCGAACGTTGAAGGATACTCGGATTTGCTTTCGCCTGAAGCTTGTGGTCCTCTCGAAGAAAGTATATTCCCGGAGCATGTTTCAGATTGTTACAATCCAGGAAATCCATTAAGGAGTTCAAGCACTAGAAATCAAGGTGCTTCTTGGTTGCTGTCTTGGTAA 1404 0.4117 MKRPSALVDVFLVLALFSCNSWTTRSSSESCNPNYVEEIRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPIVDSLPSYGRGRELPGGRHKSLIYGNNLTDVIITGNNGTIDGQGRIWWSRFRNKTLDYTRPHLVELMNSSGILISNLTFLNSPFWNIHPVYCSHVTVQNVTIHAPSSSPNTDGINPDSSDDICIEDCYISTGDDLVAIKSGWDEYGISFGRPSTNIVIRRLVGKTTSAGIAIGSEMSGGVSGVFAEDIYIFDSHTGIGIKTARGRGGYVRNVYISKMTLDNVDIAIRLNGLYKEHPDDDYNPDALPVIEKITIKDVIGENIKRAGLIQGIKGDNFVDICLSNITLSVSSKTPWNCSNVEGYSDLLSPEACGPLEESIFPEHVSDCYNPGNPLRSSSTRNQGASWLLSW* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1262 467 PANTHER PECTIN LYASE-RELATED 7 452 - -
Ahy19g1262 467 PANTHER OS07G0245200 PROTEIN 7 452 - -
Ahy19g1262 467 Gene3D - 21 422 IPR012334 -
Ahy19g1262 467 SMART pbh1 299 320 IPR006626 -
Ahy19g1262 467 SMART pbh1 328 349 IPR006626 -
Ahy19g1262 467 SMART pbh1 211 237 IPR006626 -
Ahy19g1262 467 SMART pbh1 238 270 IPR006626 -
Ahy19g1262 467 SMART pbh1 142 195 IPR006626 -
Ahy19g1262 467 SMART pbh1 272 293 IPR006626 -
Ahy19g1262 467 Pfam Glycosyl hydrolases family 28 137 418 IPR000743 GO:0004650|GO:0005975
Ahy19g1262 467 SUPERFAMILY Pectin lyase-like 38 431 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1262 Ahy-Chr19 25099792 25103723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1262 1 467 Glycoside Hydrolase AT3G62110 66.596 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1262 - - gmx:100786985 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1262 19 25099792 25103723 Ahy19g1262 19 25099792 25103723 ECH
Ahy19g1262 19 25099792 25103723 Ahy9g0995 9 19566140 19570026 hybridization
Ahy16g0793 16 14206688 14210399 Ahy19g1262 19 25099792 25103723 PCT
Ahy6g0547 6 6724790 6728477 Ahy19g1262 19 25099792 25103723 PCT
Ahy19g1262 19 25099792 25103723 Ahy16g0793 16 14206688 14210399 PCT
Ahy19g1262 19 25099792 25103723 Ahy6g0547 6 6724790 6728477 PCT