Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0448 ATGTACAGAGAGAGAGAGCGAGAGCGAGGTACCAATACCAAATCGGAGGTTGATCGGAAGCGAATCAACGACGTCCTCGACAAGCAGCTGGAGCGATCGTCGCCGTCAACGTCGACGTCGAGGCCAATCAACGGCAAGGACAGGCCCTCCTCTCTCTTATCCGGCAAGTCCTCCTCCGCACGCGATCACGCCCTCAGGGACTCTCGCTCCACCGCCTCCGCCACTATCTCCAAGAACTCTAACGCTTCCGATGAGGAATCTGAGACTGACAGCGAGGAATCTGATGTTAGTGGTTCTGATGGAGATGACACGTCGTGGATCTCGTGGTTCTGCAATTTGAGAGGGAACGAGTTCTTCTGCGAGGTGGATGATGATTACATCCAGGATGACTTCAACCTTTGTGGATTGAGCAGTCAAGTGCCTTACTATGATTACGCTCTTGATTTGATTTTGGATGTTGAATCCTCTCATGGTGACATGTTTACAGAGGAACAAAATGAATTAATTGAATCAGCAGCAGAGATGCTATATGGTCTGATTCATGCCAGGTATATCTTGACAGGCAAAGGATTGGCCTCCATGCTGGACAAGTACAAGAACTATGATTTTGGTAGATGTCCAAGAGTGTACTGCTCTGGGCAGCCCTGCCTTCCGGTTGGTCAGTCAGATGTTCCAAGGTCCAGTACCGTGAAAATATACTGCCCAAGGTGTGAAGACATTTATTATCCGCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACTACATTTCCTCACCTCTTCCTGATGACTTACGGACAACTGAAGCCACAGAAACCATCACAGAGCTATGTTCCAAGAGTCTTTGGCTTCAAGCTTCACAAGCCATGA 879 0.4858 MYRERERERGTNTKSEVDRKRINDVLDKQLERSSPSTSTSRPINGKDRPSSLLSGKSSSARDHALRDSRSTASATISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTGKGLASMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDVPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0448 292 SUPERFAMILY Casein kinase II beta subunit 103 291 IPR035991 GO:0005956|GO:0019887
Ahy5g0448 292 PANTHER CASEIN KINASE II SUBUNIT BETA 13 292 - -
Ahy5g0448 292 MobiDBLite consensus disorder prediction 29 58 - -
Ahy5g0448 292 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 98 202 IPR016149 GO:0005956|GO:0019887
Ahy5g0448 292 Gene3D - 203 277 - -
Ahy5g0448 292 MobiDBLite consensus disorder prediction 1 101 - -
Ahy5g0448 292 Pfam Casein kinase II regulatory subunit 105 288 IPR000704 GO:0005956|GO:0019887
Ahy5g0448 292 PANTHER CASEIN KINASE II SUBUNIT BETA 13 292 IPR000704 GO:0005956|GO:0019887
Ahy5g0448 292 MobiDBLite consensus disorder prediction 1 28 - -
Ahy5g0448 292 PRINTS Casein kinase II regulatory subunit family signature 202 223 IPR000704 GO:0005956|GO:0019887
Ahy5g0448 292 PRINTS Casein kinase II regulatory subunit family signature 122 136 IPR000704 GO:0005956|GO:0019887
Ahy5g0448 292 PRINTS Casein kinase II regulatory subunit family signature 105 121 IPR000704 GO:0005956|GO:0019887
Ahy5g0448 292 PRINTS Casein kinase II regulatory subunit family signature 224 245 IPR000704 GO:0005956|GO:0019887
Ahy5g0448 292 PRINTS Casein kinase II regulatory subunit family signature 177 198 IPR000704 GO:0005956|GO:0019887
Ahy5g0448 292 PRINTS Casein kinase II regulatory subunit family signature 252 269 IPR000704 GO:0005956|GO:0019887
Ahy5g0448 292 ProSitePatterns Casein kinase II regulatory subunit signature. 206 237 IPR000704 GO:0005956|GO:0019887
Ahy5g0448 292 SMART CK_II_beta_2 105 288 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0448 Ahy-Chr5 5257105 5259955 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0448 K03115 - gmx:100799304 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g0448 5 5257105 5259955 Ahy11g1227 11 39554982 39558872 PCT
Ahy5g0448 5 5257105 5259955 Ahy1g1222 1 33478401 33482802 PCT
Ahy11g1234 11 39941795 39946227 Ahy5g0448 5 5257105 5259955 PCT
Ahy1g1228 1 33749438 33753189 Ahy5g0448 5 5257105 5259955 PCT