Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1234 ATGTACAAAGAGAGAGAGAAAGGTGGTGGTGTTGGGTCGAAGACTAGTGCTACAACGACGGAGGTTGATCGAAAGAGAATCAACGATGCTCTCGATAAGCACCTACACCAACACCGTTCATCTGCTTCCACTTCCCTAAACCATCACACGCATAAGACCTCCAACAATTCCACCTCTCACCATCGTAATGAGGAATCTGAAACTGATAGCGAAGAATCAGATGTTAGTGGTTCTGAAGGGGATGACACTTCTTGGATTTCATGGTTTTGCAATTTGAGAGGAAATGAATTTTTTTGTGAAGTTGACGATGATTACATACAAGATGATTTCAACCTCTGTGGATTAAGCAGTCAAGTTCCTTACTATGATTATGCGCTTGATTTAATTTTGGATGTTGAATCCTCCCATGACATGTTGACGGAGGAACAAAATGAATTAATTGAATCTGCTGCTGAGATGCTTTATGGTTTGATTCATGCCCGGTACATTTTGACAAGCAAGGGGTTGGCTACAATGCTAGATAAGTACAAGAGCTTCGACTTTGGCAGATGTCCAAGAGTTTACTGCTGTGGACAATCTTGTCTTCCGGTTGGTCAATCAGATATTCCTAGGGCAAGCACTGTCAAAATATATTGCCCCAAGTGTGAAGACATTTACTACCCACGCTCCAAGTATCAAGGTAATATGGATGGCGCGTATTTTGGAACCACATTTCCTCACCTCTTCTTGATGACTTACTCAAATCTGAAGCCGCAAAAGCCGTTGCAGTCACAGAGTTACGTTCCTAGAGTTTTTGGTTTCAAAGTTCACAAGCCCTGA 819 0.4225 MYKEREKGGGVGSKTSATTTEVDRKRINDALDKHLHQHRSSASTSLNHHTHKTSNNSTSHHRNEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHDMLTEEQNELIESAAEMLYGLIHARYILTSKGLATMLDKYKSFDFGRCPRVYCCGQSCLPVGQSDIPRASTVKIYCPKCEDIYYPRSKYQGNMDGAYFGTTFPHLFLMTYSNLKPQKPLQSQSYVPRVFGFKVHKP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1234 272 Gene3D - 181 255 - -
Ahy11g1234 272 Pfam Casein kinase II regulatory subunit 84 268 IPR000704 GO:0005956|GO:0019887
Ahy11g1234 272 PANTHER CASEIN KINASE II SUBUNIT BETA 1 271 - -
Ahy11g1234 272 MobiDBLite consensus disorder prediction 19 39 - -
Ahy11g1234 272 PANTHER CASEIN KINASE II SUBUNIT BETA 1 271 IPR000704 GO:0005956|GO:0019887
Ahy11g1234 272 SUPERFAMILY Casein kinase II beta subunit 82 271 IPR035991 GO:0005956|GO:0019887
Ahy11g1234 272 MobiDBLite consensus disorder prediction 1 80 - -
Ahy11g1234 272 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 77 180 IPR016149 GO:0005956|GO:0019887
Ahy11g1234 272 PRINTS Casein kinase II regulatory subunit family signature 230 247 IPR000704 GO:0005956|GO:0019887
Ahy11g1234 272 PRINTS Casein kinase II regulatory subunit family signature 155 176 IPR000704 GO:0005956|GO:0019887
Ahy11g1234 272 PRINTS Casein kinase II regulatory subunit family signature 84 100 IPR000704 GO:0005956|GO:0019887
Ahy11g1234 272 PRINTS Casein kinase II regulatory subunit family signature 101 115 IPR000704 GO:0005956|GO:0019887
Ahy11g1234 272 PRINTS Casein kinase II regulatory subunit family signature 180 201 IPR000704 GO:0005956|GO:0019887
Ahy11g1234 272 PRINTS Casein kinase II regulatory subunit family signature 202 223 IPR000704 GO:0005956|GO:0019887
Ahy11g1234 272 ProSitePatterns Casein kinase II regulatory subunit signature. 184 215 IPR000704 GO:0005956|GO:0019887
Ahy11g1234 272 SMART CK_II_beta_2 84 268 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1234 Ahy-Chr11 39941795 39946227 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1234 K03115 - gmx:100793573 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1234 11 39941795 39946227 Ahy11g1234 11 39941795 39946227 ECH
Ahy11g1234 11 39941795 39946227 Ahy1g1228 1 33749438 33753189 hybridization
Ahy11g1234 11 39941795 39946227 Ahy5g0448 5 5257105 5259955 PCT