Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1227 ATGTATAGAGAGCGAGGGCTAGTTGGGGCCTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTCCTCGATAAGCAGCTGGAGCGATCCTCACCGTCCACTTCGAGGGTTGGTGGCATCAATGGCGGCAGCAAAGACAGGTCTTCCCTTCTATCATCCTCCTCCAAGGACCCTCGCTCTACATCTATCTCCAAGAACTCAAACATCTCAGAGGAACCTGAAACAGACAGTGAAGAATCAGATGTTAGTGGCTCTGATGGAGATGACACCTCTTGGATCTCATGGTTCTGCAATCTCAGAGGAAATGAATTCTTTTGTGAGGTTGACGATGATTACATCCAAGATGACTTCAACCTGTGTGGGTTAAGCAGTCAAGTGCCTTACTATGATTATGCTCTTGATTTAATATTGGATGTTGAGTCCTCCCATGGTGACATGTTCACAGAGGAACAAAATGAGTTGATTGAATCAGCAGCGGAGATGCTTTATGGTCTGATTCATGCTCGATACGTATTGACAAGCAAAGGAATGGCTGCCATGCTTGACAAGTACAAGAACTATGATTTTGGAAGATGCCCAAGAGTTTACTGCTCTGGACAACCTTGCCTTCCAGTTGGTCAGTCAGATATTCCTAGGTCAAGTACTGTGAAGATATACTGCCCTAGATGTGAAGACCTATATTATCCTCGGTCCAAGTATCAAGACATTGATGGAGCATACTTTGGGACAACATTTCCACACCTCTTCCTCATGACGTATGGACAACTGAAGCCACAAAAACCATCACAGAGCTACGTTCCAAGAGTTTTTGGGTTCAAACTTCACAAGCCATGA 834 0.4532 MYRERGLVGASKSEDRKRINDVLDKQLERSSPSTSRVGGINGGSKDRSSLLSSSSKDPRSTSISKNSNISEEPETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQDIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1227 277 MobiDBLite consensus disorder prediction 1 25 - -
Ahy11g1227 277 Gene3D - 189 262 - -
Ahy11g1227 277 Pfam Casein kinase II regulatory subunit 91 273 IPR000704 GO:0005956|GO:0019887
Ahy11g1227 277 MobiDBLite consensus disorder prediction 26 70 - -
Ahy11g1227 277 ProSitePatterns Casein kinase II regulatory subunit signature. 192 223 IPR000704 GO:0005956|GO:0019887
Ahy11g1227 277 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 276 - -
Ahy11g1227 277 MobiDBLite consensus disorder prediction 1 86 - -
Ahy11g1227 277 SUPERFAMILY Casein kinase II beta subunit 89 276 IPR035991 GO:0005956|GO:0019887
Ahy11g1227 277 SMART CK_II_beta_2 91 273 IPR000704 GO:0005956|GO:0019887
Ahy11g1227 277 PANTHER CASEIN KINASE II SUBUNIT BETA 1 276 IPR000704 GO:0005956|GO:0019887
Ahy11g1227 277 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 84 188 IPR016149 GO:0005956|GO:0019887
Ahy11g1227 277 PRINTS Casein kinase II regulatory subunit family signature 188 209 IPR000704 GO:0005956|GO:0019887
Ahy11g1227 277 PRINTS Casein kinase II regulatory subunit family signature 210 231 IPR000704 GO:0005956|GO:0019887
Ahy11g1227 277 PRINTS Casein kinase II regulatory subunit family signature 108 122 IPR000704 GO:0005956|GO:0019887
Ahy11g1227 277 PRINTS Casein kinase II regulatory subunit family signature 91 107 IPR000704 GO:0005956|GO:0019887
Ahy11g1227 277 PRINTS Casein kinase II regulatory subunit family signature 163 184 IPR000704 GO:0005956|GO:0019887
Ahy11g1227 277 PRINTS Casein kinase II regulatory subunit family signature 237 254 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1227 Ahy-Chr11 39554982 39558872 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1227 K03115 - gmx:100799304 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1227 11 39554982 39558872 Ahy1g1222 1 33478401 33482802 hybridization
Ahy5g0448 5 5257105 5259955 Ahy11g1227 11 39554982 39558872 PCT