Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2177 ATGTCAGAAATTGACATGGCAGTTAGTAAACCCGAGATTATGCAGCCGTATATCTGGCTTCAGACAACAGATGGTGCAATACAACAAGTGGAACAGGAAATTGCAATGTCTTGCCCTTTTATTTGTCAAGAAGTAATACAAAAAGGCACGGGATCTTCAAAGAACTGTGCAATATGTCTTCCTCAACGAGTCACCCCTACTATTTTGAGCTTAATACTTGATTATTGCCGATTTCATCAAGTACCAGGTCGCTCAAACAAGGAGCGGAAGTCTTATGATGAGAAATTCATGCGGATGGACACGAAGCAGTTATGCGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAACCATTGGTTGATCTTACCAGCCGTACACTTGCTCGAATAATTGAAGGAAAATCCCCTGAGGAAATACGCGGCATATTTAATTTGCCAGATGATCTTACAGAGGAAGAGAAATTGGAGCCCTTGAAAAACACAACTGCTGATCCGAGGATCAGGCTTTTGAACCGTTTGTATGCTAAGAAAAGGAAAGAGCTGAAGGAGCGTGAGAGGCTAAAGAATGTTGAAGTTGAAGAAGAGCATGTGGATGATCGTTCAGTCGATGACCTTTTGTCTTTTATTAATGGAAATGATGCAGATCCAAAGGAGATGAAAAATTCTAAGAATAAAAAGAAAAACCGAAGAAGAAAAGAGCAACAGACGAGCTCTTCTTTGAAGGAAGCTTCTGAACTGAACAATAAGGAGATAAATGGTCATAATATCAGACCCCAAACTGATGGAGCTAATGGAGTTTCCGAGGCCTCACAGTCTAATACAGAAGACAGCACTTTTGTTCCTAGAGAGTTTGATGATGGAGATATAGATGAGGAGATCGATCCTGCATTACAGGAAAAACTTGACAGGGAAGTGGAAGATTTCGCTCGCATATTAAATTCTGACTGGCCAAAGAGGATGCAGGAACTGTTGTCGTTGGGGCAAGAAAGAAAAGCAATGCCTTTTACATCCAACGGAAACAGTTTTTTAAGACGAAATGCTTAG 1044 0.4109 MSEIDMAVSKPEIMQPYIWLQTTDGAIQQVEQEIAMSCPFICQEVIQKGTGSSKNCAICLPQRVTPTILSLILDYCRFHQVPGRSNKERKSYDEKFMRMDTKQLCELTSAADSLQLKPLVDLTSRTLARIIEGKSPEEIRGIFNLPDDLTEEEKLEPLKNTTADPRIRLLNRLYAKKRKELKERERLKNVEVEEEHVDDRSVDDLLSFINGNDADPKEMKNSKNKKKNRRRKEQQTSSSLKEASELNNKEINGHNIRPQTDGANGVSEASQSNTEDSTFVPREFDDGDIDEEIDPALQEKLDREVEDFARILNSDWPKRMQELLSLGQERKAMPFTSNGNSFLRRNA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2177 347 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Ahy4g2177 347 SMART skp1_3 15 116 IPR001232 GO:0006511
Ahy4g2177 347 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Ahy4g2177 347 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Ahy4g2177 347 Coils Coil 170 190 - -
Ahy4g2177 347 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
Ahy4g2177 347 MobiDBLite consensus disorder prediction 207 289 - -
Ahy4g2177 347 MobiDBLite consensus disorder prediction 239 278 - -
Ahy4g2177 347 PANTHER SKP1-LIKE PROTEIN 20 1 279 - -
Ahy4g2177 347 PANTHER SKP1 1 279 IPR016897 GO:0006511
Ahy4g2177 347 SUPERFAMILY POZ domain 16 80 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2177 Ahy-Chr4 116932557 116938710 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2177 - - gmx:100809439 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2456 14 129440868 129443925 Ahy4g2177 4 116932557 116938710 hybridization
Ahy4g2177 4 116932557 116938710 Ahy12g0066 12 1637371 1642747 PCT
Ahy4g2177 4 116932557 116938710 Ahy2g0028 2 285420 290793 PCT
Ahy12g0066 12 1637371 1642747 Ahy4g2177 4 116932557 116938710 PCT
Ahy2g0028 2 285420 290793 Ahy4g2177 4 116932557 116938710 PCT