Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1191 ATGGCCACTGCCCAAAACGGCACCGTCACAGCAACCACCATCACCGACGCAAACAATTCGACTCAGGAACCGGCCACCGCCCTCGGAGCCACGACTGCTGAGAAGAGATGGCCTGGTTGGCCTGGGGAGTGCGTGTTCCGGCTGATCGTGCCGATGGGCAAGGTCGGCAGCATCATCGGTCGCAAGGGTGAGCTCGTCAAGAAGACCTGCGAAGACACACGCGCCCGCATTCGCGTCCTCGACGCCCCTCTCGGCACTCCCGATCGAGTTGTACTGATAACTGGGAAGGAAGAGCCAGAGGCAGCTCTTTCCCCTGCAATGGATGCTACGATAAGAATATTTAAGCGTATCTCTGGGTTATCTGAAACTGACAGTGACAACAAAGGATCTGCCGGGGTTGTATTTTGTTCCATCCGCTTGTTGGTGGCATCAACACAAGCTGTCAATTTGATTGGAAAACAAGGATCGTTAATCAAATCTATGCAGGAGAGTAGTGGTGCTTCTATTAGGGTATTGTCAGCAGATGAGACGCAATTTCATGCTGCTACCACGGATGAGAGGATTGTGGAACTTCAGGGAGAAGCCTTGAAAGTCCTTAAAGCTCTGGAAGCAGTGGTTGGCCACCTAAGAAGGTTTTTGGTTGATCATAGTGTTCTTCCTCTATTTGAGAAACCTTACACCGCCCCAACCACACAACCCCATCAAGCAGAGACCTTGGCCGACAAGTCATTGCATATTGCTTCTCAAACTAGCATTTTTTCAGATATTTCTCTTCCAACGAAAAGGGATTCTGTCTTTGCTGATCGTGGAAGTCTTTTGGACTCATTACTTCCTTCCTCCACTGTGTCTGTCTACGGGCAAGATTCTTCACTTTCTGCTGTTCGATCTTCGGCACTTACTCCACTTAGTCGTGCTGCTGCTCCTATTGTTAGTACGGTAGTACAAACCATGCAAATACCATTGTCATACGCGGAGGACATCATTGGTGTTCAAGGGACTAATATTGAATACATTCGTCGAACTAGTGGAGCGATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATTGTTGTGGAAATAAAAGGCTCCTCATCTCAAGTTCAGACGGCAGAGCAATTGATTCAGGAAGTGATAAGCAACCACAAAGATCCTGTTGCAAGCAGTTATGGAAGAGTAGATGCAGGTTTGAGGTCTTCGTACGCTGCAGTGGGCGAGACAGGTTTGGGGTCTTCATACTCTACGGTGGGAGACACAGGTTTGAGGTCTTCATACGCCACACTGGGCGATGTAGGTTTGAGGAATTCATACTCTACGGTGGGCACTGCATCACGCCCTGCACCGTCCTTGACTTCACAACCTTACTCAGGTTATGGAGCTTCTAGTTTAGGAGACTATAGTACTTTCAGACTTTAA 1416 0.4887 MATAQNGTVTATTITDANNSTQEPATALGATTAEKRWPGWPGECVFRLIVPMGKVGSIIGRKGELVKKTCEDTRARIRVLDAPLGTPDRVVLITGKEEPEAALSPAMDATIRIFKRISGLSETDSDNKGSAGVVFCSIRLLVASTQAVNLIGKQGSLIKSMQESSGASIRVLSADETQFHAATTDERIVELQGEALKVLKALEAVVGHLRRFLVDHSVLPLFEKPYTAPTTQPHQAETLADKSLHIASQTSIFSDISLPTKRDSVFADRGSLLDSLLPSSTVSVYGQDSSLSAVRSSALTPLSRAAAPIVSTVVQTMQIPLSYAEDIIGVQGTNIEYIRRTSGAILTVQESRVPDEIVVEIKGSSSQVQTAEQLIQEVISNHKDPVASSYGRVDAGLRSSYAAVGETGLGSSYSTVGDTGLRSSYATLGDVGLRNSYSTVGTASRPAPSLTSQPYSGYGASSLGDYSTFRL* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1191 471 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 31 416 - -
Ahy4g1191 471 ProSiteProfiles Type-1 KH domain profile. 135 205 - -
Ahy4g1191 471 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 135 216 IPR036612 GO:0003723
Ahy4g1191 471 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 37 98 IPR036612 GO:0003723
Ahy4g1191 471 Gene3D - 43 213 - -
Ahy4g1191 471 Pfam KH domain 315 377 IPR004088 GO:0003723
Ahy4g1191 471 Pfam KH domain 138 205 IPR004088 GO:0003723
Ahy4g1191 471 Pfam KH domain 46 99 IPR004088 GO:0003723
Ahy4g1191 471 SMART kh_6 134 210 IPR004087 GO:0003676
Ahy4g1191 471 SMART kh_6 311 380 IPR004087 GO:0003676
Ahy4g1191 471 SMART kh_6 42 115 IPR004087 GO:0003676
Ahy4g1191 471 ProSiteProfiles Type-1 KH domain profile. 312 375 - -
Ahy4g1191 471 MobiDBLite consensus disorder prediction 1 24 - -
Ahy4g1191 471 CDD PCBP_like_KH 137 206 - -
Ahy4g1191 471 CDD PCBP_like_KH 45 114 - -
Ahy4g1191 471 CDD KH-I 314 376 - -
Ahy4g1191 471 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 31 416 - -
Ahy4g1191 471 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 307 381 IPR036612 GO:0003723
Ahy4g1191 471 ProSiteProfiles Type-1 KH domain profile. 43 110 - -
Ahy4g1191 471 Gene3D K Homology domain, type 1 310 385 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1191 Ahy-Chr4 32311556 32317477 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1191 K21444 - gmx:100815466 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1290 14 30197664 30203591 Ahy4g1191 4 32311556 32317477 hybridization
Ahy11g3080 11 148441011 148445149 Ahy4g1191 4 32311556 32317477 PCT
Ahy1g1891 1 95485842 95490024 Ahy4g1191 4 32311556 32317477 PCT
Ahy4g1191 4 32311556 32317477 Ahy11g3080 11 148441011 148445149 PCT
Ahy4g1191 4 32311556 32317477 Ahy1g1891 1 95485842 95490024 PCT