Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1891 ATGGCTACCGTCGAACCAATCCAGAACGGCACCTCCAACAATGTTTCCCAGCCACTTGCACCGGCAAATGCCGCCGCCGCCGCCGAACAACCCTCCACCGCCACCACCACTACAACCGCCTTAGCGGCAGCCGCCACCGAATCCACTGCCGTAGGCAGCGCAAACCCTTCAACCGATGCACCCGAATCCGAGGCGGTTCCGGCACCTGAAGCTGCCGCAACCGGCAGTACCACCACCACTCCGCCGGAGAAGAGATGGCCTGGTTGGCCCGGCCACTGCGTGTTCCGGCTCATCGTGCCGGTGCTCAAAGTCGGCAGCATAATTGGGCGGAAGGGCGAGCTCATTAAGAAGACATGTGAAGAGACTCGAGCTCGCATTCGCGTTCTAGATGGTGCTGTCGGCACTTCCGATCGAATCGTACTTATATCAGGGAAGGAAGATCCAGAGACAGCATTCTCTCCTGCAATGGATGCTGTAATTAGGATTTTTAAGCGTATATCGGGATTATCTGAAACTGAGGGCGAGAATATGACATTGGGAGCTTCCGGGGGCAATTTTTGTTCTATCCGTTTATTGGTAGCATCAACACAGGCCATCAATTTGATTGGAAAGCAGGGCTCGTTAATCAAATCCATACAGGAAAGCACTGCTGCTTCTGTTAGAGTATTGTCAGGAGACGAGGTGCCATTTTATGCTGCGGCCGATGAAAGGATTGTAGAGCTGCAGGGAGAAGTCTTGAAGGTGCTTAAGGCACTGGAAGCAGTAGTTGGGCACCTGAGGAAATTTTTGGTGGATCATACTGTTCTTCCCCTATTTGAGAAAACTTACAATGCAACAATCTCCCAAGACCACCAGGTGGATACCTGGGCTGACAAGCCATCGCTGTATAGTGCTTCCCAACCTTCCATTGTTGCTGATGTTTCTCTTCCAACAAAAAGGGATGCTCTCTTTGTTGAGCGTGAGAATCAATTGGATTCATTACTCCCTTCCTCCTCAGTGTCACTGTACGGGCAAGATTCTTCACTTTCTGGTCTTCGTTCTTCAGCTCTGGGCCGTGCTGCTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATAATTGGTATACAAGGGACTAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACGGTGCAGGAGAGCAGAGTGCCTGATGAAATTATTGTGGAAAAAAAAGGCACCTCATCTCAGGTTCAGTTGGCACAACAACTGATTCAGGAAGTGATAACTAATCACAAAGAGCCTGCCGCTAGTGCTTACAGCAGGTTAGATGCCGATCTGAGGTCTACTTACGCCCAATTGGGCAGTACATCATACTCATCATCTTCGTTGTCCACGCAACCTTACAGCGGTTATGGTTCTTCTGGTCTTGGAGGCTACAGTTCTTTCAGACTTTAA 1455 0.4976 MATVEPIQNGTSNNVSQPLAPANAAAAAEQPSTATTTTTALAAAATESTAVGSANPSTDAPESEAVPAPEAAATGSTTTTPPEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDGAVGTSDRIVLISGKEDPETAFSPAMDAVIRIFKRISGLSETEGENMTLGASGGNFCSIRLLVASTQAINLIGKQGSLIKSIQESTAASVRVLSGDEVPFYAAADERIVELQGEVLKVLKALEAVVGHLRKFLVDHTVLPLFEKTYNATISQDHQVDTWADKPSLYSASQPSIVADVSLPTKRDALFVERENQLDSLLPSSSVSLYGQDSSLSGLRSSALGRAAGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEKKGTSSQVQLAQQLIQEVITNHKEPAASAYSRLDADLRSTYAQLGSTSYSSSSLSTQPYSGYGSSGLGGYSSFRL* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1891 484 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 68 478 - -
Ahy1g1891 484 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 359 430 IPR036612 GO:0003723
Ahy1g1891 484 Gene3D - 92 263 - -
Ahy1g1891 484 MobiDBLite consensus disorder prediction 1 20 - -
Ahy1g1891 484 ProSiteProfiles Type-1 KH domain profile. 186 255 - -
Ahy1g1891 484 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 85 148 IPR036612 GO:0003723
Ahy1g1891 484 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 180 269 IPR036612 GO:0003723
Ahy1g1891 484 MobiDBLite consensus disorder prediction 1 87 - -
Ahy1g1891 484 ProSiteProfiles Type-1 KH domain profile. 92 159 - -
Ahy1g1891 484 PANTHER PROTEIN, PUTATIVE-RELATED 68 478 - -
Ahy1g1891 484 CDD PCBP_like_KH 188 256 - -
Ahy1g1891 484 MobiDBLite consensus disorder prediction 28 60 - -
Ahy1g1891 484 CDD PCBP_like_KH 94 163 - -
Ahy1g1891 484 Pfam KH domain 189 255 IPR004088 GO:0003723
Ahy1g1891 484 Pfam KH domain 95 147 IPR004088 GO:0003723
Ahy1g1891 484 Pfam KH domain 364 426 IPR004088 GO:0003723
Ahy1g1891 484 SMART kh_6 360 429 IPR004087 GO:0003676
Ahy1g1891 484 SMART kh_6 91 167 IPR004087 GO:0003676
Ahy1g1891 484 SMART kh_6 185 260 IPR004087 GO:0003676
Ahy1g1891 484 Gene3D K Homology domain, type 1 360 435 IPR036612 GO:0003723
Ahy1g1891 484 ProSiteProfiles Type-1 KH domain profile. 361 424 - -
Ahy1g1891 484 CDD KH-I 363 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1891 Ahy-Chr1 95485842 95490024 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1891 K21444 - gmx:100802089 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3080 11 148441011 148445149 Ahy1g1891 1 95485842 95490024 hybridization
Ahy1g1891 1 95485842 95490024 Ahy14g1290 14 30197664 30203591 PCT
Ahy1g1891 1 95485842 95490024 Ahy4g1191 4 32311556 32317477 PCT
Ahy14g1290 14 30197664 30203591 Ahy1g1891 1 95485842 95490024 PCT
Ahy4g1191 4 32311556 32317477 Ahy1g1891 1 95485842 95490024 PCT