Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g1290 ATGGCCACTGCCCAAAACGGCACCGTCACAGCAACCACCATCACCGACGCAAACAATTCGACTCAGGAACCGGCCACCGCCCTCGGAGCCACGACTCCGGCGGAGAAGAGATGGCCTGGTTGGCCTGGGGAGTGCGTGTTCCGGCTGATCGTGCCGATGGGCAAGGTCGGCAGCATCATCGGTCGCAAGGGTGAGCTCGTCAAGAAGACCTGCGAAGACACACGCGCCCGCATTCGCGTCCTCGACGCCCCTCTCGGCACTCCCGATCGAGTTGTACTGATAACTGGGAAGGAAGAGCCAGAGGCAGCTCTTTCCCCTGCAATGGATGCTACGATAAGAATATTTAAGCGTATCTCTGGGTTATCTGAAACTGACAGTGACAACAAAGGATCTGCCGGGGTTGTATTTTGTTCCATCCGCTTGTTGGTGGCATCAACACAAGCTGTCAATTTGATTGGAAAACAAGGATCGTTAATCAAATCTATGCAGGAGAGTAGTGGTGCTTCTATTAGGGTATTGTCAGCAGATGAGACGCAATTTCATGCTGCTACCACGGATGAGAGGATTGTGGAACTTCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTGGTTAGCCACCTAAGAAGGTTTTTGGTTGATCATAGTGTTCTTCCTCTATTTGAGAAACCTTACACCGCCCCAACCACTCAACCCCATCAAGCAGAGACCTTGGCCGACAAGTCATTGCATATTGCTTCTCAAACTAGCATTTTTTCAGATATTTCTCTTCCAACGAAAAGGGATTCTGTCTTTGCTGATCGTGGAAGTCTTTTGGACTCGTTACTTCCTTCCTCCACTGTGTCTGTCTACGGGCAAGATTCTTCACTTTCTGCTGTTCGATCTTCAGCACTTACTCCACTTAGTCGTGCTGCTGCTCCTATTGTTAGTACGGTAGTACAAACCATGCAAATACCATTGTCATACGCGGAGGACATCATTGGTGTTCAAGGGACTAATATTGAATACATTCGTCGAACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATCGTTGTGGAAATAAAAGGCTCCTCATCTCAAGTTCAGACGGCAGAGCAATTGATTCAGGAAGTGATAAGCAACCACAAAGATCCTGTTGCAAGCAGTTATGGAAGAGTAGATGCAGGTTTGAGGTCTTCGTACGCAGCAGTGGGCGAGACAGGTTTGGGGTCTTCATACTCTACGGTGGGCGACACAGGTTTGAGGTCTTCATACGCTACACTGGGCGATGTAGGTTTGAGGAATTCATACTCTACGGTGGGCACTGCGTCACGCCCTGCACCGTCCTTGACTTCACAACCTTACTCAGGTTATGGAGCTTCTAGTTTAGGAGACTATAGTACTTTCAGACTTTAA 1419 0.4919 MATAQNGTVTATTITDANNSTQEPATALGATTPAEKRWPGWPGECVFRLIVPMGKVGSIIGRKGELVKKTCEDTRARIRVLDAPLGTPDRVVLITGKEEPEAALSPAMDATIRIFKRISGLSETDSDNKGSAGVVFCSIRLLVASTQAVNLIGKQGSLIKSMQESSGASIRVLSADETQFHAATTDERIVELQGEALKVLKALEAVVSHLRRFLVDHSVLPLFEKPYTAPTTQPHQAETLADKSLHIASQTSIFSDISLPTKRDSVFADRGSLLDSLLPSSTVSVYGQDSSLSAVRSSALTPLSRAAAPIVSTVVQTMQIPLSYAEDIIGVQGTNIEYIRRTSGAILTVQESRVPDEIVVEIKGSSSQVQTAEQLIQEVISNHKDPVASSYGRVDAGLRSSYAAVGETGLGSSYSTVGDTGLRSSYATLGDVGLRNSYSTVGTASRPAPSLTSQPYSGYGASSLGDYSTFRL* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g1290 472 MobiDBLite consensus disorder prediction 1 35 - -
Ahy14g1290 472 SMART kh_6 135 211 IPR004087 GO:0003676
Ahy14g1290 472 SMART kh_6 312 381 IPR004087 GO:0003676
Ahy14g1290 472 SMART kh_6 43 116 IPR004087 GO:0003676
Ahy14g1290 472 ProSiteProfiles Type-1 KH domain profile. 44 111 - -
Ahy14g1290 472 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 136 218 IPR036612 GO:0003723
Ahy14g1290 472 ProSiteProfiles Type-1 KH domain profile. 313 376 - -
Ahy14g1290 472 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 32 417 - -
Ahy14g1290 472 MobiDBLite consensus disorder prediction 1 28 - -
Ahy14g1290 472 Gene3D K Homology domain, type 1 311 386 IPR036612 GO:0003723
Ahy14g1290 472 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 32 417 - -
Ahy14g1290 472 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 38 99 IPR036612 GO:0003723
Ahy14g1290 472 Pfam KH domain 316 378 IPR004088 GO:0003723
Ahy14g1290 472 Pfam KH domain 139 206 IPR004088 GO:0003723
Ahy14g1290 472 Pfam KH domain 47 100 IPR004088 GO:0003723
Ahy14g1290 472 CDD PCBP_like_KH 138 207 - -
Ahy14g1290 472 Gene3D - 44 215 - -
Ahy14g1290 472 ProSiteProfiles Type-1 KH domain profile. 136 206 - -
Ahy14g1290 472 CDD PCBP_like_KH 46 115 - -
Ahy14g1290 472 CDD KH-I 315 377 - -
Ahy14g1290 472 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 308 382 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g1290 Ahy-Chr14 30197664 30203591 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g1290 K21444 - gmx:100815466 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1290 14 30197664 30203591 Ahy4g1191 4 32311556 32317477 hybridization
Ahy11g3080 11 148441011 148445149 Ahy14g1290 14 30197664 30203591 PCT
Ahy1g1891 1 95485842 95490024 Ahy14g1290 14 30197664 30203591 PCT
Ahy14g1290 14 30197664 30203591 Ahy11g3080 11 148441011 148445149 PCT
Ahy14g1290 14 30197664 30203591 Ahy1g1891 1 95485842 95490024 PCT