Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1186 ATGGGAACACGCTTCAGACAGGCCGTTGGAGCTATCAAGGACTCTACCACGGTTGGCCTTGCCAAAGTTAATAGTGATTACAAGGAATTGGATGTTGCAATCGTGAAAGCTACCAATCACGTAGAATATCCTCCTAAAGAACGTCACATGCGCACAATATTGCATGCAACATCAGCAAGTCAACCAAGAGCAGATGTGGCATACTGCATTCACAAACTTTCCAAAAGGCTTTACAAGACAAAAAACTGGATAGTTGCTATAAAGACATTGATAGTGATGCATAGGTTATTGAGAGAGGGTGATCCTACTTTCAGAGAAGAGCTCCTAAACTACACACGCAGGGGACACTTTCTCCAAATATCCAATTTCAAAGATGACACCACTCCTCAAGCTTGGGATTGTTCTGCATGGGTTCGAACCTATGCACTTTTTTTACAAGAAAGACTTGAATGCTTTAGAACACTCAAATACGACATTGAAACAGAGCGTTTCGTAAAATCACCAACTTCTTCAGCTAAACCACTTACAAGAACTCGGTCTTTGGGTGCTGTAGAACTGTTGGAGCAGTTACCTGCATTGCAGCAACTTCTGCAACGCCTTATAGGTTGCCAGCCTGAAGGATGCGCTTATGGAAATTATCTTGTACAATATGCATTAGCCCTGGTATTGAAAGAGAGCTTCAAAATATATTGTTCATTGAATGATGGAATCATCAATCTTGTGGATGTGTTCTTTGATATGGAAAGACATAACGCAGTGAGGGCTCTGAAAATTTATAAAAGAGCAGGCCAACAGGCTGAGCATCTTGCTCAGTTTTATGAATACTGCAAAGGGTTGGAGATTGCAAGGAATTTCCAATTTCCATGTCTAAGACAGCCACCCCCCTCTTTCCTTGCAACAATGGAAGAATACATTGGAGAAGCACCACAAACTAGCTCTGTTCATCAAAGACTGGAATATCGTGAAGCTGATCTATCACCTTCTAGAGAAGATCCTCCAGAAACCGACGAGCCTGAAGAGCCTCAAGAAACTGAAGGAGAAGAAGAGAATGAGGAAGAACCAGTTGTCAACGGAGAGCCAAATCCTGTGGAAGTGGAAGAGGCTGCTCCGCTGATATCGAATAATTGGATCGATGATGACTTGCTGGGTCTGCGTGAAATAAATCCTCAAGCTGTTGAACTTGAAGAAAGAAATGCTTTGGCCCTTGCAATTGTACAACCTGGTGGAAATAATTCAAACAATCTTGCTTTGAACAACATTGGTGACACTACTGGTTGGGAACTAGCACTGGTTACAGCACAAAGCAACCATACTAGCCAAGCGCCAGATCAAAATATGGCTGGTGGGTTTGACAAGTTATTACTAGATAGTTTATATGAAGATGAGAATGCAAGAAGACAACTTCAGCTCCAAAATGCAGGTTATGGATATGGTGGAAATGGAATGGCCATACAAAACCCATTTGAAAATGATAATGATCCATTTGCAGTGTCCAACAACATAGCACCCCCAACCAGTGTTCAATTGGCATTGCAACAACAACAACAACAAATGCTGTTCCAACAACAACAGAACAATAACATGATGATGACGCCTTACCAGCAGCAACCATATTACAATCCATTTGGAGACCCTTTACCAGTGCCTAACTATGCATATGGTTCTACACCAGCACAGGGAAATTATAATTTAATGTAG 1698 0.4176 MGTRFRQAVGAIKDSTTVGLAKVNSDYKELDVAIVKATNHVEYPPKERHMRTILHATSASQPRADVAYCIHKLSKRLYKTKNWIVAIKTLIVMHRLLREGDPTFREELLNYTRRGHFLQISNFKDDTTPQAWDCSAWVRTYALFLQERLECFRTLKYDIETERFVKSPTSSAKPLTRTRSLGAVELLEQLPALQQLLQRLIGCQPEGCAYGNYLVQYALALVLKESFKIYCSLNDGIINLVDVFFDMERHNAVRALKIYKRAGQQAEHLAQFYEYCKGLEIARNFQFPCLRQPPPSFLATMEEYIGEAPQTSSVHQRLEYREADLSPSREDPPETDEPEEPQETEGEEENEEEPVVNGEPNPVEVEEAAPLISNNWIDDDLLGLREINPQAVELEERNALALAIVQPGGNNSNNLALNNIGDTTGWELALVTAQSNHTSQAPDQNMAGGFDKLLLDSLYEDENARRQLQLQNAGYGYGGNGMAIQNPFENDNDPFAVSNNIAPPTSVQLALQQQQQQMLFQQQQNNNMMMTPYQQQPYYNPFGDPLPVPNYAYGSTPAQGNYNLM* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1186 565 SUPERFAMILY GAT-like domain 177 307 - -
Ahy4g1186 565 SMART enth_2 28 159 IPR013809 -
Ahy4g1186 565 Gene3D ANTH domain 173 323 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Ahy4g1186 565 CDD ANTH_N 30 152 - -
Ahy4g1186 565 Gene3D - 3 159 IPR008942 -
Ahy4g1186 565 MobiDBLite consensus disorder prediction 333 355 - -
Ahy4g1186 565 SUPERFAMILY ENTH/VHS domain 29 160 IPR008942 -
Ahy4g1186 565 MobiDBLite consensus disorder prediction 317 332 - -
Ahy4g1186 565 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 4 550 - -
Ahy4g1186 565 ProSiteProfiles ENTH domain profile. 22 159 IPR013809 -
Ahy4g1186 565 PANTHER CLATHRIN ASSEMBLY PROTEIN 4 550 IPR045192 GO:0048268|GO:0072583
Ahy4g1186 565 Pfam ANTH domain 29 305 IPR011417 GO:0005543
Ahy4g1186 565 MobiDBLite consensus disorder prediction 308 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1186 Ahy-Chr4 31775999 31783180 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1186 K20044 - gmx:100783084 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1281 14 29718592 29726257 Ahy4g1186 4 31775999 31783180 hybridization
Ahy11g3073 11 148381207 148385073 Ahy4g1186 4 31775999 31783180 PCT
Ahy1g1900 1 95652888 95656804 Ahy4g1186 4 31775999 31783180 PCT
Ahy4g1186 4 31775999 31783180 Ahy11g3073 11 148381207 148385073 PCT
Ahy4g1186 4 31775999 31783180 Ahy1g1900 1 95652888 95656804 PCT