Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0923 ATGGTGATTGCAAAGAGAGTTGGTGTTGATGTTATTTTGTGGTTGGCAGTGGCTTGTTTTGTGGTAGAAGGTGATGAAAGAGTAAGGCCAATTGCTGGGCCTGATATCTATGAGGGTCGCAATGTAGCTAAGGATGTTCTTGCTCCTGGTGAGATTATTAATAATGTCATGAGCTTTGGTGCCAAACCTGATGGGAAGTTTGATTGCACTCAGGCGTTCATGGACGCATGGAGAGCAACATGCAAGTCGAAAGTGCAAGCAAGGGTTCTGGTCCCTCTAGGAAGGTTCGTGGTTTCGGCAATGTACTTCGCCGGGCCGTGCACGACTCCGGGGCCCGTCACGGTCCAAGTTGAAGGCACCGTGGTTGCAACAACGGACATCAGCGAGTATGTTGACGGCGAATGGCTCATGTTCCAAGACCTCTCCGGTATCAAACTCATTGGTGGTGGCACCTTTGATGGACAAGGAAAAGATTCATGGTCCCAAACTGAGAATTGTGAAACCGACTCCGATAGCGCCTGTGTTAGAGCTCCTAGTAGCATTTTCTTCAGCAGGGTGAACAATGGAATCATACAGAACATAAAAACCTTGAACCCCAAAGGCTTTCACATATTTGTCACAAACTGTGCCAACATTAGACTTAGGTTGCTTAAGCTCACAGCACCAGGTACCAGCCCCAATACTGATGGAATCCACATTAGCCACTCCATCAATGTCAAAATATCAAAATCCAACATTGAAACCGGTGATGATTGTGTCTCTATGATTCAAGGGGTCAACAATGTTACCATTAAGAGACTAAAGTGTGGCCCTGGACATGGTATTAGTATTGGTAGTCTTGGAAAATATCAAGATGAGCTAGAGGTGAGAGGAATTAGGGTGGAGAATTGCACATTGGTTGGCACAACCAATGGCCTAAGAATAAAGTCATGGCCAGAGAAGTATTCAGGTTTAGCAACAGATATAAGCTATAGTGATATTACCATGGAAAATGTTAAAAACCCTATCATCATTGATCAAGAATATCAATGTTCTCCAGGCATCTGCAAAAAGAAGCCATCACTTGTAAAGATATCAAATGTTGGTTTTATAAATGTAAAAGGAACAACAATTTCACCAATTGCAGTGGATTTAAGGTGTAGTAAGCAATTCCCATGTGAAAATGTTCAACTTCACAACATAGACCTCAAGCTTCTTGGACCTATCCTTCCTTCTGGCGCAAGATGTGCCAACGTTAAACCTATCTATGGAGGCATTCAAATGCCACCAGCATGTCCATAG 1281 0.4364 MVIAKRVGVDVILWLAVACFVVEGDERVRPIAGPDIYEGRNVAKDVLAPGEIINNVMSFGAKPDGKFDCTQAFMDAWRATCKSKVQARVLVPLGRFVVSAMYFAGPCTTPGPVTVQVEGTVVATTDISEYVDGEWLMFQDLSGIKLIGGGTFDGQGKDSWSQTENCETDSDSACVRAPSSIFFSRVNNGIIQNIKTLNPKGFHIFVTNCANIRLRLLKLTAPGTSPNTDGIHISHSINVKISKSNIETGDDCVSMIQGVNNVTIKRLKCGPGHGISIGSLGKYQDELEVRGIRVENCTLVGTTNGLRIKSWPEKYSGLATDISYSDITMENVKNPIIIDQEYQCSPGICKKKPSLVKISNVGFINVKGTTISPIAVDLRCSKQFPCENVQLHNIDLKLLGPILPSGARCANVKPIYGGIQMPPACP* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0923 426 PANTHER - 3 425 - -
Ahy4g0923 426 Gene3D - 48 420 IPR012334 -
Ahy4g0923 426 PANTHER POLYGALACTURONASE 3 425 - -
Ahy4g0923 426 SUPERFAMILY Pectin lyase-like 53 425 IPR011050 -
Ahy4g0923 426 Pfam Glycosyl hydrolases family 28 81 413 IPR000743 GO:0004650|GO:0005975
Ahy4g0923 426 ProSitePatterns Polygalacturonase active site. 266 279 IPR000743 GO:0004650|GO:0005975
Ahy4g0923 426 SMART pbh1 259 279 IPR006626 -
Ahy4g0923 426 SMART pbh1 289 310 IPR006626 -
Ahy4g0923 426 SMART pbh1 319 340 IPR006626 -
Ahy4g0923 426 SMART pbh1 209 235 IPR006626 -
Ahy4g0923 426 SMART pbh1 236 257 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0923 Ahy-Chr4 16925035 16929194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0923 46 425 Glycoside Hydrolase AT4G18180 42.963 7.05e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0923 K01213 - gmx:106796220 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1016 14 17337362 17341938 Ahy4g0923 4 16925035 16929194 hybridization
Ahy11g2588 11 142069130 142071192 Ahy4g0923 4 16925035 16929194 PCT
Ahy1g2339 1 101375605 101377650 Ahy4g0923 4 16925035 16929194 PCT
Ahy4g0923 4 16925035 16929194 Ahy11g2588 11 142069130 142071192 PCT
Ahy4g0923 4 16925035 16929194 Ahy1g2339 1 101375605 101377650 PCT