Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2588 ATGGGCATTGCAAAGCAAAATACTCTTTTTATTACTATTATTTGCTTTGCATTGGCCTCTTCTGCGGTTGCTAAGCCAAGAGCACGGCCACATAGTGGCCCAGATATCTACAAGGGCAGGAATGTAGCAAAAGATACCCTTCTTCCCGGCGAGAAGGTTAACAATGTGCTCGATTTCGGAGCCCAACCCGACGGCGAATTCGACTCTACCCAGGCATTCATGGATGCATGGCAAGCAACATGCAAATCAACAGTGCAAAGTAGGGTATATGTTCCAGAGGGTAGATTCTTGGTTTCCTCAATGTTCTTTTCAGGGCCATGCATGACCCCACATCCCGTAACAGTTCAAGTTGATGGAACTATTTTGGCCCCAACCGATATTTCCGAGTTTGAAAACGATGAGTGGCTCCTTTTCCAGAACCTTAACGGCTTAAGACTCATTGGTCAAGGTACCTTTGATGGGCAGGGTAAGGATTCATGGAAATACACCGAGAATTGTGAATCTAAGAGAGACGGTTCTGCATGCGTCAGAAATCCTAGCAGTCTTTTCTTCAGCCGAGTGAACGATGCGATTATACAGGGGATTAGGTCTGTGAATCCAAAGGGGTTTCACATATTTGTGACTAACTGTGGAAACATAAGGTTGCGAAGGCTTAAGCTGACAGCACCAGAAACTAGCCCCAACACTGATGGCATTCATGTTAGCCACTCCATCAATGTCATCATGTCTAGAAACACCATTGCAACTGGTGATGACTGTGTCTCTATAATCCAAGGTTCTGTCAATGTTACCATGAACAGACTCAGGTGTGGCCCAGGACATGGTGTTAGCATCGGTAGCCTTGGAAAGTATGCAGATGAGTTAGAGGTGAAAGGTATTCGCCTCATAAACGCCACATTGCTTGGAACAACCAATGGTGTCAGAATCAAAACTTGGCCAGACAGATTCCCAGGTTCAGCCTCGGATATATTTTTCACAAACATCGACATGGTAAATGTTAAAAACCCCATCATCATTGACCAAGAGTATGAATGCTTTCCAAACTGCAAAAAGAAGCCATCACTTGTGAAGCTTAACAATATTCAATTCAATAATATAAGGGGAACCACGATTAGTCCAGTTGCAGTGGACTTAAGGTGCAGCAAATTGTTCCCATGCAAAGGTGTCATACTTCGCAACATTGATCTCAAGCTTGGATTGCTTCCAACCATGTCTAGATGTGTTAACATTAATCCACTGTATTTCGGCGGTTTGCAAGTCCCACCAGCTTGCGTTTAG 1278 0.4429 MGIAKQNTLFITIICFALASSAVAKPRARPHSGPDIYKGRNVAKDTLLPGEKVNNVLDFGAQPDGEFDSTQAFMDAWQATCKSTVQSRVYVPEGRFLVSSMFFSGPCMTPHPVTVQVDGTILAPTDISEFENDEWLLFQNLNGLRLIGQGTFDGQGKDSWKYTENCESKRDGSACVRNPSSLFFSRVNDAIIQGIRSVNPKGFHIFVTNCGNIRLRRLKLTAPETSPNTDGIHVSHSINVIMSRNTIATGDDCVSIIQGSVNVTMNRLRCGPGHGVSIGSLGKYADELEVKGIRLINATLLGTTNGVRIKTWPDRFPGSASDIFFTNIDMVNVKNPIIIDQEYECFPNCKKKPSLVKLNNIQFNNIRGTTISPVAVDLRCSKLFPCKGVILRNIDLKLGLLPTMSRCVNINPLYFGGLQVPPACV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2588 425 SUPERFAMILY Pectin lyase-like 49 422 IPR011050 -
Ahy11g2588 425 PANTHER POLYGALACTURONASE 7 421 - -
Ahy11g2588 425 Pfam Glycosyl hydrolases family 28 81 411 IPR000743 GO:0004650|GO:0005975
Ahy11g2588 425 Gene3D - 46 413 IPR012334 -
Ahy11g2588 425 ProSitePatterns Polygalacturonase active site. 267 280 IPR000743 GO:0004650|GO:0005975
Ahy11g2588 425 PANTHER - 7 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2588 Ahy-Chr11 142069130 142071192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2588 55 424 Glycoside Hydrolase AT4G18180 45.619 6.61e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2588 K01213 - gmx:100800324 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2588 11 142069130 142071192 Ahy11g2588 11 142069130 142071192 ECH
Ahy11g2588 11 142069130 142071192 Ahy1g2339 1 101375605 101377650 hybridization
Ahy11g2588 11 142069130 142071192 Ahy14g1016 14 17337362 17341938 PCT
Ahy11g2588 11 142069130 142071192 Ahy4g0923 4 16925035 16929194 PCT
Ahy14g1016 14 17337362 17341938 Ahy11g2588 11 142069130 142071192 PCT
Ahy4g0923 4 16925035 16929194 Ahy11g2588 11 142069130 142071192 PCT