Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2339 ATGGGCATTGCAAAGCAAAATACTCTTTTTATTACTATTATTTGCTTTGCATTGGCCTCTTATGCGGTTGCTAAGCCAAGAGCACGGCCACATAGTGGCCCAGATATCTACAAGGGAAGGAATGTAGCACGAGATACCCTTTTTCCCGGCGAGAAGGTTAACAATGTGCTCGATTTCGGAGCCCAACCCGACGGTGAATTCGACTCTACCCAGGCATTCATGGATGCATGGCAAGCAACATGCAAATCAACAGTGCAGAGTAGGGTGTATGTTCCAGAGGGTAGATTCTTGGTTTCCTCAATGTTCTTTTCAGGGCCATGCATGACCCCACATCCCGTAACAGTTCAAGTTGATGGAACTATTTTGGCCCCTACCGATATTTCCGAGTTTGAAAACGATGAGTGGCTCCTTTTCCAGAACCTTAACGGCTTAAGACTCATTGGTCAAGGTACCTTTGATGGGCAGGGTAAGGATTCATGGAAATACACCGAGAATTGTGAATCTAAGAGAGACGGTTCTGCATGCGTCAGAAATCCTAGCAGTCTATTCTTCAGCCGGGTCAACGATGCGATTATACAGGGGATTAGGTCTGTGAATCCAAAAGGGTTTCACATATTTGTGACTAACTGTGGAAACATAAGGTTGCGAAGGCTTAAGCTTACAGCACCAGAAACTAGCCCCAACACTGATGGCATCCATGTTAGCCACTCCATCAATGTCATCATGTCTAGAAACACCATTGCAACTGGTGATGACTGTGTCTCTATAATCCAAGGTTCTGTCAATGTTACCATGAACAGACTCAGGTGTGGCCCAGGACATGGTGTTAGCATCGGTAGCCTTGGAAAGTATGCAGACGAGTTAGAAGTGAAAGGTATTCGCCTCATAAACGCCACATTGCTTGGAACAACCAATGGTGTCAGAATCAAAACTTGGCCAGATAGATTCCCAGGTTCAGCCTCGGATATATTCTTCACAAACATCGACATGGTAAATGTTAAAAACCCCATCATCATTGACCAAGAGTATGAATGCTTTCCAAACTGCAAAAAGAAGCCATCACTTGTGAAGCTTAACAATATTCAATTCAATAATATAAGGGGAACCACGATTAGTCCAGTTGCAGTGGACTTAAGGTGCAGCAAATTGTTCCCATGCAAAGGTGTCATACTTGGCAACATTGATCTCAAGCTTGGATTCCTTCCAACCATGTCTAGATGTGTTAACATTAATCCACTGTATTTCGGCGGTTTGCAAGTCCCACCAGCTTGCGTTTAG 1278 0.4429 MGIAKQNTLFITIICFALASYAVAKPRARPHSGPDIYKGRNVARDTLFPGEKVNNVLDFGAQPDGEFDSTQAFMDAWQATCKSTVQSRVYVPEGRFLVSSMFFSGPCMTPHPVTVQVDGTILAPTDISEFENDEWLLFQNLNGLRLIGQGTFDGQGKDSWKYTENCESKRDGSACVRNPSSLFFSRVNDAIIQGIRSVNPKGFHIFVTNCGNIRLRRLKLTAPETSPNTDGIHVSHSINVIMSRNTIATGDDCVSIIQGSVNVTMNRLRCGPGHGVSIGSLGKYADELEVKGIRLINATLLGTTNGVRIKTWPDRFPGSASDIFFTNIDMVNVKNPIIIDQEYECFPNCKKKPSLVKLNNIQFNNIRGTTISPVAVDLRCSKLFPCKGVILGNIDLKLGFLPTMSRCVNINPLYFGGLQVPPACV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2339 425 PANTHER POLYGALACTURONASE 7 421 - -
Ahy1g2339 425 SUPERFAMILY Pectin lyase-like 49 422 IPR011050 -
Ahy1g2339 425 Pfam Glycosyl hydrolases family 28 81 411 IPR000743 GO:0004650|GO:0005975
Ahy1g2339 425 ProSitePatterns Polygalacturonase active site. 267 280 IPR000743 GO:0004650|GO:0005975
Ahy1g2339 425 PANTHER - 7 421 - -
Ahy1g2339 425 Gene3D - 48 413 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2339 Ahy-Chr1 101375605 101377650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2339 55 424 Glycoside Hydrolase AT4G18180 45.619 1.69e-102 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2339 K01213 - gmx:106796220 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2588 11 142069130 142071192 Ahy1g2339 1 101375605 101377650 hybridization
Ahy1g2339 1 101375605 101377650 Ahy14g1016 14 17337362 17341938 PCT
Ahy1g2339 1 101375605 101377650 Ahy4g0923 4 16925035 16929194 PCT
Ahy14g1016 14 17337362 17341938 Ahy1g2339 1 101375605 101377650 PCT
Ahy4g0923 4 16925035 16929194 Ahy1g2339 1 101375605 101377650 PCT