Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3785 ATGGCGGAGACTTGGACAGCGTTGGTTGTGATATTGTGTTTCCTTGGTTTGATTCTGAAGGAGTCAATTATGGGAGGTAAGAGTTCAAGAGAATCTGGCGGTGATAGGAGGCATGTGCCATCGTACGGTTCTGGTGGTGCTTCATCTTCATCTTGGGACAATTATGGATACTCGCAACCGCCACCGTATGCATATCAACCGTCAATTCAACACCGGCCACCCGCCGCTCCGTATTACGATTATCAACAGCCGAAAAGGAGGTTGGATAGGAGATATTCCAAGATTGCTGATAATTACCGTTCACTCGACGAGGTTACTGCTGCTCTTTCACAAGCTGGCCTAGAATCTTCTAATCTCATTGTCGGCATTGATTTCACAAAAAGCAATGAGTGGACAGGAAAGAGATCATTCAACCGAAAAAGTTTACATCATCTCGGAAATGGCCATAATCCTTATGAACAGGCGATCTCCATTATTGGGACAACTCTATCTGCCTTTGACGAGGATAACTTGATTCCATGTTTTGGATTCGGAGATGCATCAACACATGATCAAGATGTCTTCAGTTTCTACCCAGATGATAGATTCTGCAATGGATTTGAGGAAGTTTTGTCAAAATACAGAGAAATTGTTCCTCGTCTCAAACTAGCAGGACCCACTTCTTTCGCACCTATCATTGAGATGGCAATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGCGTTGACACAGAGCGTGGCCAGTTAAGTCCACAGGAACAGAAGACAATTGATGCAATTGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATTCCTGCTCGAGCCTTTGACAATTTCCAGTTTGTGAATTTTACTGAAATAATGTCAAAGAGTGTAGATTCAGAAAGGAAAGAGACAGAGTTTGCTCTATCAGCTCTGATGGAGATACCTTCTCAATATAAGGCAACCATAGACCATGGCATATTGGGTGCTCGGAGGGGATATTCACCGGACAGGGTTGCTTTACCTCCACCTCAATATGACAGGGCTTCCAGCAGCAACAACATATCTTTTCGCAGTAATAGTTTTCAGCAGAGTACTCCTTCGCACACTGTCTATGATAATGCAGTTAGTACCAGTGCAGAATCATCACCGGGTGGCTTATATGATCATAAGCTTTGTCCAATTTGTCTTACTAATGGGAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTAACTGTGGAGAGAATCTTGAATTCTGCCCCATTTGCAGGAGCACAATCGATACTAGAATAAAGCTTTACTAG 1389 0.4334 MAETWTALVVILCFLGLILKESIMGGKSSRESGGDRRHVPSYGSGGASSSSWDNYGYSQPPPYAYQPSIQHRPPAAPYYDYQQPKRRLDRRYSKIADNYRSLDEVTAALSQAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHLGNGHNPYEQAISIIGTTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDRFCNGFEEVLSKYREIVPRLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTERGQLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKSVDSERKETEFALSALMEIPSQYKATIDHGILGARRGYSPDRVALPPPQYDRASSSNNISFRSNSFQQSTPSHTVYDNAVSTSAESSPGGLYDHKLCPICLTNGKDMAFGCGHQTCCNCGENLEFCPICRSTIDTRIKLY* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3785 462 PANTHER COPINE FAMILY PROTEIN 1 24 462 - -
Ahy3g3785 462 CDD RING-HC_RGLG_plant 418 462 IPR045317 GO:0061630|GO:0070534
Ahy3g3785 462 ProSiteProfiles Zinc finger RING-type profile. 419 452 IPR001841 -
Ahy3g3785 462 Pfam Zinc finger, C3HC4 type (RING finger) 416 457 - -
Ahy3g3785 462 PANTHER RING-FINGER PROTEIN 24 462 - -
Ahy3g3785 462 SUPERFAMILY RING/U-box 413 458 - -
Ahy3g3785 462 SMART VWA_4 116 319 IPR002035 -
Ahy3g3785 462 Pfam Copine 141 354 IPR010734 -
Ahy3g3785 462 SUPERFAMILY vWA-like 118 300 IPR036465 -
Ahy3g3785 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 462 IPR013083 -
Ahy3g3785 462 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3785 Ahy-Chr3 137251530 137255806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3785 K16280 - gmx:100800161 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4063 13 140069966 140074028 Ahy3g3785 3 137251530 137255806 hybridization
Ahy3g3785 3 137251530 137255806 Ahy20g1087 20 17178579 17183581 PCT
Ahy3g3785 3 137251530 137255806 Ahy10g0791 10 10250106 10255159 PCT