Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1087 ATGAATCCGGAGCTGGAGATTTTGACAGCATTGTTTGCAATTTTGTGCTTCTTGGGGTTTATTCTGAAGGAGACAGTCATGGGAGGGAAGAGTTCAAGAGAGTGTGTTGGTGGTGATCGGAGACATGTTTCCTCATCATGTGGTGGTGGTGGTGGTTCTTCATCTTCATGGGATAACTATGGAGGGTACCCTAATCAGAGTCCATATCAAACACCTCAACACCACCATGCATCAGCTCCATATTATGACTATGCTTCTTCACAACCAAAGAGAAAGCTTGATAGGAGATATTCAAGGATTAATGATGATTACCGTTCACATGATGAGGTTACTGCTGCTCTTGCAAATGCTGGCCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGCGGTCATTCAATCGAAAATGTTTGCATCATATTGGAAATGGTTATAACCCCTATGAACAAGCTATCTCGATTATCGGGAAAACTTTATCCGTTTTCGACGAAGATAACTTGATTCCTTGTTATGGATTTGGAGATGCATCGACGCATGATCAAGATGTATTTAGTTTCCATTCGGACGAGAGGTTCTGCAATGGATTTGAGGAAGTTTTGGCACGATACAGACAAATTGTTCCGCGCCTCAAACTTGCAGGACCTACTTCATTTGCCCCAATTATCGAGATGGCGATAACTATTGTTGAGCAAAGTGGTGGCCAGTATCATGTCTTGCTGATAATTGCAGATGGACAGGTGACCAGAAGTATTGACACCAAGCATGGACACTTGAGTCCACAAGAACAGAAGACAATAGATGCCATTGTAAAAGCCAGTGAGTATCCACTCTCAATAGTTTTGGTCGGAGTTGGAGATGGACCTTGGGATATGATGAGGGAATTTGATGATAACATCCCTACTAGATCATTCGACAATTTTCAGTTTGTGAATTTTACCGAAATAATGTCGAGGAGTGCGGATCCGGCCAAAAGAGAGGCAGACTTTGCTCTGGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCCTGGAACTTGGCATCTTAGGTTCAAGGAGGGGACATTCACCAGACAGGGTTCCTCTACCCCCACCTCTTTATGAAAGGAATCCATCTAGCCTTAGCACGAGATCTTATCGGCCGGACAGTTTTCAGCAGAATACGCCTATGCATACTGGCTATGATAATAGAGTTAACGCAGAACAATCTTCAAGTCCTCTATATGATAACAAGGTTTGTCCAATTTGTCTCACCAATGCAAAGGATATGGCTTTTGGTTGCGGGCATCAGACTTGTTGCGAATGCGGTGTAAACCTCGAATTCTGCCCCATTTGCCGGAGCACAATCCAAACCAGGATAAGGCTTTACTAG 1401 0.4347 MNPELEILTALFAILCFLGFILKETVMGGKSSRECVGGDRRHVSSSCGGGGGSSSSWDNYGGYPNQSPYQTPQHHHASAPYYDYASSQPKRKLDRRYSRINDDYRSHDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKCLHHIGNGYNPYEQAISIIGKTLSVFDEDNLIPCYGFGDASTHDQDVFSFHSDERFCNGFEEVLARYRQIVPRLKLAGPTSFAPIIEMAITIVEQSGGQYHVLLIIADGQVTRSIDTKHGHLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPTRSFDNFQFVNFTEIMSRSADPAKREADFALAALMEIPSQYKATLELGILGSRRGHSPDRVPLPPPLYERNPSSLSTRSYRPDSFQQNTPMHTGYDNRVNAEQSSSPLYDNKVCPICLTNAKDMAFGCGHQTCCECGVNLEFCPICRSTIQTRIRLY* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1087 466 CDD RING-HC_RGLG_plant 422 466 IPR045317 GO:0061630|GO:0070534
Ahy20g1087 466 PANTHER COPINE FAMILY PROTEIN 1 54 466 - -
Ahy20g1087 466 MobiDBLite consensus disorder prediction 32 53 - -
Ahy20g1087 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 466 IPR013083 -
Ahy20g1087 466 MobiDBLite consensus disorder prediction 379 411 - -
Ahy20g1087 466 CDD vWA_copine_like 100 350 IPR010734 -
Ahy20g1087 466 ProSiteProfiles Zinc finger RING-type profile. 423 456 IPR001841 -
Ahy20g1087 466 MobiDBLite consensus disorder prediction 363 411 - -
Ahy20g1087 466 Pfam Zinc finger, C3HC4 type (RING finger) 420 461 - -
Ahy20g1087 466 PANTHER RING-FINGER PROTEIN 54 466 - -
Ahy20g1087 466 SMART VWA_4 121 324 IPR002035 -
Ahy20g1087 466 Pfam Copine 146 359 IPR010734 -
Ahy20g1087 466 SUPERFAMILY RING/U-box 412 462 - -
Ahy20g1087 466 SUPERFAMILY vWA-like 122 306 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1087 Ahy-Chr20 17178579 17183581 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1087 K16280 - gmx:100798816 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1087 20 17178579 17183581 Ahy10g0791 10 10250106 10255159 hybridization
Ahy13g4063 13 140069966 140074028 Ahy20g1087 20 17178579 17183581 PCT
Ahy3g3785 3 137251530 137255806 Ahy20g1087 20 17178579 17183581 PCT