Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3776 ATGGAAGAACACATAGCATGCAGCAGTGAGTTTGCAGGTGTTAATATAATTTCAAGCTGGTGCTTCCTAATCGGCTTGTTGGTGACGCTGAAGCACTTAATCTCCCTTTCCAAATGGATCTTCGCCACCTTTCTCAGATCCCAAATAGACCTAATCAGAACCTACGGTTCCTGGGCCATGGTCACCGGAGCAACCGACGGAATCGGAAAAGCCATGGCTCACCGCTTAGCACACCGAGGACTCAACATCATCCTCGTCAGCAGATCCTCCAAGAGGCTCCAAACCGTCGCAACTGAACTCCAGGCACACCACCCTCACATCCTCGTCAAGGCCATCCAGATGGACTTCTCCGGCGACATAGCGGAGGGTCTCCGGCAAATAGCGGCGGCCACACGCGAATTGGACCTCGGGATACTGATCAACAACGTGGGGATCACGTACCCTGGGGCTATGTTCTTTGACCAAGTGGAAGAGAAGGTGTGGAGGAAGATCTTAAAGGTGAATGTGGAAGGAACCACGAGGGTGACAAGAGCGGTGGTGGCCGGAATGATGGAGCGGAGAAGGGGTGCAATTGTTAACATTGGATCTGGTGCTTCCGTCGTCATTCCTTCGCATCCTCTCTATTCCATCTATGCTGCTTCAAAGGCTTACGTGGATCAGCTATCAAGATCTCTGCACGTCGAGTACAAACAGTATGGGATTCACGTCCAGTGTCAGGTACCACTTTATGTAGCAACGAAGATGGTATCAAAGGTAGCATGCATAGAGAAAGATTCATTTTTCATTCCAACACCAGAGGCTTATGCAAAAGCGGCCGTTCGTAAAATTGGGCATGGGCCAAGGTGCACTCCTTATTGGGCTCACTCTATTCAGTGGTTCTTTGCAGGCTTAGCCCCGGACCCACTTCTCGATGCTTGGCGCTTTTCTATCGCAATGCGCCGCTGGAAAGGAATCCAATAA 960 0.5073 MEEHIACSSEFAGVNIISSWCFLIGLLVTLKHLISLSKWIFATFLRSQIDLIRTYGSWAMVTGATDGIGKAMAHRLAHRGLNIILVSRSSKRLQTVATELQAHHPHILVKAIQMDFSGDIAEGLRQIAAATRELDLGILINNVGITYPGAMFFDQVEEKVWRKILKVNVEGTTRVTRAVVAGMMERRRGAIVNIGSGASVVIPSHPLYSIYAASKAYVDQLSRSLHVEYKQYGIHVQCQVPLYVATKMVSKVACIEKDSFFIPTPEAYAKAAVRKIGHGPRCTPYWAHSIQWFFAGLAPDPLLDAWRFSIAMRRWKGIQ* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3776 319 PIRSF 11-beta-HSD1 7 318 - -
Ahy3g3776 319 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Ahy3g3776 319 PRINTS Glucose/ribitol dehydrogenase family signature 183 199 IPR002347 -
Ahy3g3776 319 PRINTS Glucose/ribitol dehydrogenase family signature 58 75 IPR002347 -
Ahy3g3776 319 PRINTS Glucose/ribitol dehydrogenase family signature 134 145 IPR002347 -
Ahy3g3776 319 PRINTS Glucose/ribitol dehydrogenase family signature 232 249 IPR002347 -
Ahy3g3776 319 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 198 226 IPR020904 GO:0016491
Ahy3g3776 319 PANTHER RH59310P 22 315 - -
Ahy3g3776 319 CDD 17beta-HSD1_like_SDR_c 56 299 - -
Ahy3g3776 319 Gene3D - 50 285 - -
Ahy3g3776 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 145 IPR002347 -
Ahy3g3776 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 189 197 IPR002347 -
Ahy3g3776 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Ahy3g3776 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 52 310 IPR036291 -
Ahy3g3776 319 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 22 315 - -
Ahy3g3776 319 Pfam short chain dehydrogenase 58 252 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3776 Ahy-Chr3 137141520 137145095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3776 21 314 Lipid Metabolism Gene Families AT1G24470 61.356 1.83e-127 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3776 K10251 - csin:114314729 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4055 13 139969971 139977210 Ahy3g3776 3 137141520 137145095 hybridization
Ahy3g3776 3 137141520 137145095 Ahy20g1049 20 16106648 16109268 PCT
Ahy3g3776 3 137141520 137145095 Ahy10g0755 10 9198424 9201011 PCT