Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4055 ATGGAAGAACACAAAGCATGCAGCAGTGAGCTTGCAGGTGTTAATATAATTTCAAGCTGGTGCTTCCTAATCGGCTTGGTGGTGACGCTGAAGTACTTGATCTCCCTTTCCAAATGGATCTTCGCCACCTTTCTCCGACCCGAAATAGACCTAATAGGAACCTACGGTTCCTGGGCCATGGTCACCGGAGCAACCGACGGAATCGGAAAAGCCATGGCTCACCGCTTAGCACACCGAGGACTCAACATCATCCTCGTCAGCAGATCCTCCAAGAGGCTCCAAACCGTCGCAACTGAACTCCAAGCACGCCACCCTCACATCCTCGTCAAGGCCATCCAGATGGACTTCTCCGGCGACATAGCGGAGGGTCTCCGGCAAATAGCGGCGGCCACACGCGAATTGGACCTCGGGATACTGATCAACAACGTGGGGATCACGTACCCTGGGGCTATGTTCTTTGACCAAGTGGAAGAGAAGGTGTGGAGGAAGATCTTAAAGGTGAATGTGGAAGGAACGACGAGGGTGACAAGAGCGGTGGTGCCCGGAATGATGGAGCGGAGAAGGGGTGCAATTATTAACATTGGATCTGGCGCTTCCGTCGTCATTCCTTCGCATCCTCTCTATTCCATCTATGCTGCTTCAAAGGCTTACGTGGATCAGCTATCAAGATCTCTGTACGTCGAGTATAAACAGTATGGGATTCACGTCCAGTCTCAGGTACCACTGTATGTAGCAACGAAGATGGCATCAGAGATAGCATGTATAGAGAAAGATTCACTTTTCATTCCAACACCAGAGGCTTATGCAAAAGCGGCCGTTCGTAAAATTGGGCATGGGCCAAGGTGCACTCCTTATTGGGCTCACTCTATTCAGTGGTTCTTTGCAGGCTTAGCCCCGGACCCACTTCTCGATGCTTGGCGCTTTTCTATAGCAATGCGACGCTGGAAAGGAATCAAATACTAA 963 0.5078 MEEHKACSSELAGVNIISSWCFLIGLVVTLKYLISLSKWIFATFLRPEIDLIGTYGSWAMVTGATDGIGKAMAHRLAHRGLNIILVSRSSKRLQTVATELQARHPHILVKAIQMDFSGDIAEGLRQIAAATRELDLGILINNVGITYPGAMFFDQVEEKVWRKILKVNVEGTTRVTRAVVPGMMERRRGAIINIGSGASVVIPSHPLYSIYAASKAYVDQLSRSLYVEYKQYGIHVQSQVPLYVATKMASEIACIEKDSLFIPTPEAYAKAAVRKIGHGPRCTPYWAHSIQWFFAGLAPDPLLDAWRFSIAMRRWKGIKY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4055 320 PIRSF 11-beta-HSD1 7 319 - -
Ahy13g4055 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 311 IPR036291 -
Ahy13g4055 320 CDD 17beta-HSD1_like_SDR_c 56 299 - -
Ahy13g4055 320 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 22 315 - -
Ahy13g4055 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Ahy13g4055 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 189 197 IPR002347 -
Ahy13g4055 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 145 IPR002347 -
Ahy13g4055 320 PANTHER RH59310P 22 315 - -
Ahy13g4055 320 PRINTS Glucose/ribitol dehydrogenase family signature 183 199 IPR002347 -
Ahy13g4055 320 PRINTS Glucose/ribitol dehydrogenase family signature 134 145 IPR002347 -
Ahy13g4055 320 PRINTS Glucose/ribitol dehydrogenase family signature 58 75 IPR002347 -
Ahy13g4055 320 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Ahy13g4055 320 PRINTS Glucose/ribitol dehydrogenase family signature 232 249 IPR002347 -
Ahy13g4055 320 Pfam short chain dehydrogenase 58 252 IPR002347 -
Ahy13g4055 320 Gene3D - 53 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4055 Ahy-Chr13 139969971 139977210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4055 21 314 Lipid Metabolism Gene Families AT1G24470 59.661 4.12e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4055 K10251 - mnt:21410235 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4055 13 139969971 139977210 Ahy3g3776 3 137141520 137145095 hybridization
Ahy13g4055 13 139969971 139977210 Ahy20g1049 20 16106648 16109268 PCT
Ahy13g4055 13 139969971 139977210 Ahy10g0755 10 9198424 9201011 PCT