Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2617 ATGGGAAACTGCTTCTCCGACGTCCCCGGTGGCCGTGCTGCCATCGGGGGAACTGCCCGAGGCCTCCTCAACGCCATCGACGCTCCCAACGACGCTGTTGACAACTTCCTCATGTCCCGCGGCTACCACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCCGGCTTGCGTGATCGAGATTTTCTCTCGAAGAGTGATCCAATGATGGTTCTTTATACAAGAGGGAAACATGGAGCACTTGAGGAAATCGGCCGTACTGAAGTAGTTCTGAATTCTTTGGATCCTAAGTGGATTACTAAACACTTAATCATGTATCATTTCGAGGTTGTTCAGTTTTTAGTGTTTCGACTGTACGACATTGATACTCAGTTTCACAATTTGGATGTGAAGATGCTTAAGCTAGAAGAGCAACAATTTCTAGGTGAGGCAACTTGTGCATTATCGGAGATAATTATAAAGTCTGATCGATCATTGGCATTAGAGCTACGTAGAGAAGATCCTATCAGATCTATGCATTCCCAAACTTGCGGGAAGCTCTTGGTGCATGCAGAGGAATGTGTTGGCTCAAAGACTACAGTAGAGATGATATTTAGGTGCTCAGATTTGGAAAATAGGGATCTCTTCTCAAAAAGTGATCCCTTTTTGATAATATCAAAACTTGTGGAAGGTGGTACCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCTCAGCCCACAGTGGAAGCCAGTGTTCTTAAACATTCAACAAGTAGGAGGCAAGGACAATCCTTTGATACTAGAGTGTTATAACTTCAATACCAATGGCAAACATGATTTGATAGGAAAAGTGCAAAAGTCTTTGGCAGAGTTGGAGAAGCTTCATGCTAGTGGTCAAGGGGAAACTTTATTTTTGCCTACTGGTGGTGGTCATAATTCTCATAACAAGGTATTAAAGAGCCGGGTATATCTGGACAAATTTTCTGAAAGTGTCCAATATAGTTTCCTTGATTACTTGTCTGCGGGTTTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGGAATCCACGCCTCCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAAGGCAATTGTTGAGGTTGGAGAGGTGCTACAGTTTTATGATTCAGACAAACGATTTCCTACATGGGGATTTGGTGCCCGACCAATTGATGGTCCTGTTTCCCATTGTTTTAACCTCAATGGAAGCAGTCACTATTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCATACACAAGTGCCCTGCTTAATGTTTCTCTTGCGGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTTATTGCCAGCCAATCTGTAGCAACTGGTGCAAGAAAGTATTTTGTTTTGTTGATAATCACAGATGGAGTGGTGACAGATCTCCAAGAAACAAAAGATGCCCTTGTTAAAGCCTCTGACCTACCATTATCAATCCTTATCGTTGGAGTTGGAGGAGCTGATTTCAAAGAAATGGAGATTTTAGATGCTGACAAGGGAGAGAGACTCGAAAGTTCATTTGGACGTGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTTCGAGATGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTAGCAGAATTACCTACTCAATTTTTATCGTACATGAGAAACAGGAATATCCAACCGACTCTCTAA 1740 0.4236 MGNCFSDVPGGRAAIGGTARGLLNAIDAPNDAVDNFLMSRGYHGLFSQIELSFSASGLRDRDFLSKSDPMMVLYTRGKHGALEEIGRTEVVLNSLDPKWITKHLIMYHFEVVQFLVFRLYDIDTQFHNLDVKMLKLEEQQFLGEATCALSEIIIKSDRSLALELRREDPIRSMHSQTCGKLLVHAEECVGSKTTVEMIFRCSDLENRDLFSKSDPFLIISKLVEGGTHIPICKTEVIKNDLSPQWKPVFLNIQQVGGKDNPLILECYNFNTNGKHDLIGKVQKSLAELEKLHASGQGETLFLPTGGGHNSHNKVLKSRVYLDKFSESVQYSFLDYLSAGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQKAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVATGARKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSFGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLSYMRNRNIQPTL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2617 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 170 IPR035892 -
Ahy3g2617 579 Gene3D C2 domain 194 310 IPR035892 -
Ahy3g2617 579 CDD vWA_copine_like 312 566 IPR010734 -
Ahy3g2617 579 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 578 - -
Ahy3g2617 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 195 289 IPR035892 -
Ahy3g2617 579 ProSiteProfiles VWFA domain profile. 343 562 IPR002035 -
Ahy3g2617 579 SMART C2_3c 198 297 IPR000008 -
Ahy3g2617 579 SMART C2_3c 48 161 IPR000008 -
Ahy3g2617 579 Gene3D C2 domain 52 193 IPR035892 -
Ahy3g2617 579 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Ahy3g2617 579 SUPERFAMILY vWA-like 342 524 IPR036465 -
Ahy3g2617 579 SMART VWA_4 341 538 IPR002035 -
Ahy3g2617 579 CDD C2A_Copine 47 169 - -
Ahy3g2617 579 Pfam C2 domain 54 153 IPR000008 -
Ahy3g2617 579 Pfam C2 domain 198 290 IPR000008 -
Ahy3g2617 579 ProSiteProfiles C2 domain profile. 177 300 IPR000008 -
Ahy3g2617 579 PANTHER COPINE 1 578 IPR045052 GO:0005544
Ahy3g2617 579 CDD C2B_Copine 195 290 IPR037768 -
Ahy3g2617 579 Pfam Copine 362 577 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2617 Ahy-Chr3 117016734 117021986 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2617 - - gmx:100807801 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2956 13 119475858 119481114 Ahy3g2617 3 117016734 117021986 hybridization
Ahy3g2617 3 117016734 117021986 Ahy18g2897 18 133717557 133724320 PCT
Ahy18g2897 18 133717557 133724320 Ahy3g2617 3 117016734 117021986 PCT