Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2956 ATGGGTAACTGCTTCTCCGACGTCCCCGGTGGCCGCGCTGCCATCGGGGGAACTGCCCGAGGCCTCCTCAACGCCATCGACGCTCCCAACGACGCTGTCGACAACTTCCTCAGGTCCCGCGGCTACCACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGAGATTTTCTCTCTAAGAGTGATCCAATGATGGTTCTTTATACAAGAGGGAAACATGGAGCACTTGAGGAAATCGGCCGTACTGAAGTAGTTCTGAATTCTTTGGATCCTAAGTGGATTACTAAACACTTAATCATGTATCATTTCGAGGTTGTTCAGTTTTTAGTGTTTCGAGTGTACGACGTTGATACTCAGTTTCACAATTTGGATGTGAAGATGCTTAAGCTAGAAGAGCAACAATTTCTAGGTGAGGCAACTTGTGCATTATCGGAGATAATTATAAAGTCTGATCGATCATTGGCATTAGAGCTACGTAGAGAAGATCCTATCAGATCTATGCATTCCCAAAATTGCGGGAAGCTCTTGGTGCATGCAGAGGAATGTGTTGGCTCAAAGACTACAGTAGAGTTGATATTTAGGTGCTCAGATTTGGAAAATAGGGATCTCTTCTCAAAAGTGTATGATCCTTTTTTGATAATATCAAAACTTGTGGAAGGTGGTACCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCTCAGCCCACAGTGGAAGCCAGTGTTCTTAAACATTCAACAAGTAGGAGGCAAGGACAATCCTTTGATACTAGAGTGTTATAACTTCAATACCAATGGCAAACATGATTTGATAGGAAAAGTGCAAAAGTCTTTGGCAGAGTTGGAGAAGCTTCATGCTAGTGGTCAAGGAGAAACTTTATTTTTGCCTACTGGCGGTGGTCATAATTCTCATAACAAGGTATTAAAGAGCCGGGTATATCTGGACAAATTTTCTGAAAGTGTCCAATATAGTTTCCTTGATTACTTGTCTGCGGGTTTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGGAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAAGGCAATTGTTGAGGTTGGAGAGGTGCTACAGTTTTATGATTCAGACAAACGATTTCCTACATGGGGATTTGGTGCCCGACCAATTGATGGTCCTGTTTCCCATTGTTTTAACCTGAATGGAAGCAGTCACTATTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCATACACAAGTGCCCTGCTTAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTTATTGCCAGCCAATCTGTAGCAACTGGTGCAAGAAAGTATTTTGTTTTGTTAATAATCACAGATGGAGTGGTGACAGATCTCCAAGAAACAAAAGATGCCCTTGTTAAAGCCTCTGACCTACCATTATCAATCCTTATCGTTGGAGTTGGAGGAGCTGATTTCAAAGAAATGGAGATTTTAGATGCTGACAAGGGAGAGAGACTCGAAAGTTCATTCGGACGTGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTTCGAGATGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTAGCAGAATTACCTACTCAATTTTTATCGTACATGAGAAACAGGAATATCCAACCTACTCTCTAA 1743 0.4217 MGNCFSDVPGGRAAIGGTARGLLNAIDAPNDAVDNFLRSRGYHGLFSQIELSFSASGLRDRDFLSKSDPMMVLYTRGKHGALEEIGRTEVVLNSLDPKWITKHLIMYHFEVVQFLVFRVYDVDTQFHNLDVKMLKLEEQQFLGEATCALSEIIIKSDRSLALELRREDPIRSMHSQNCGKLLVHAEECVGSKTTVELIFRCSDLENRDLFSKVYDPFLIISKLVEGGTHIPICKTEVIKNDLSPQWKPVFLNIQQVGGKDNPLILECYNFNTNGKHDLIGKVQKSLAELEKLHASGQGETLFLPTGGGHNSHNKVLKSRVYLDKFSESVQYSFLDYLSAGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQKAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVATGARKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSFGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLSYMRNRNIQPTL* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2956 580 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 579 - -
Ahy13g2956 580 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Ahy13g2956 580 CDD C2B_Copine 195 291 IPR037768 -
Ahy13g2956 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 289 IPR035892 -
Ahy13g2956 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 170 IPR035892 -
Ahy13g2956 580 CDD vWA_copine_like 313 567 IPR010734 -
Ahy13g2956 580 Gene3D C2 domain 193 311 IPR035892 -
Ahy13g2956 580 PANTHER COPINE 1 579 IPR045052 GO:0005544
Ahy13g2956 580 SUPERFAMILY vWA-like 343 525 IPR036465 -
Ahy13g2956 580 SMART VWA_4 342 539 IPR002035 -
Ahy13g2956 580 CDD C2A_Copine 47 169 - -
Ahy13g2956 580 SMART C2_3c 48 161 IPR000008 -
Ahy13g2956 580 SMART C2_3c 198 298 IPR000008 -
Ahy13g2956 580 Pfam Copine 363 578 IPR010734 -
Ahy13g2956 580 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Ahy13g2956 580 Pfam C2 domain 54 153 IPR000008 -
Ahy13g2956 580 Pfam C2 domain 198 291 IPR000008 -
Ahy13g2956 580 ProSiteProfiles VWFA domain profile. 344 563 IPR002035 -
Ahy13g2956 580 Gene3D C2 domain 52 192 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2956 Ahy-Chr13 119475858 119481114 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2956 - - gmx:100807801 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2956 13 119475858 119481114 Ahy3g2617 3 117016734 117021986 hybridization
Ahy13g2956 13 119475858 119481114 Ahy18g2897 18 133717557 133724320 PCT
Ahy18g2897 18 133717557 133724320 Ahy13g2956 13 119475858 119481114 PCT