Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2897 ATGGGAAACTGCTGCTCTGACGTCGCCGGTGGCCATGCCTCCATCGGTACCACTGCGGGAGATCTCCGGCATCAGGCTGACACCGCCAACGACGCCGTCGACTACTTCCTCCGCTCCCGAGGCCACCGCGGCCTCTTCTCTCAGATCGAGTTATTGTTCTCCGCTTCGGGATTGCGCGATAGAGATGTGCTCTCAAAGAGTGACCCAATGTTGGTTCTTTATACGAAAGGAAAAAATGGAGCACTTGAGGAACTTGGGCGCACAGAAGTAGTTCTAAATTCATTGGATCCAACATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTCCAAGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATGTGAAGATGCTTAAGCTGGAAGAGCAGCAATTTCTTGGTGAGGCGACCTGTGCATTATCTGAGATAATTACAAGATTTGATCAATCATTGACGTTAGATCTACACAGAGATGACTTTATCACATCAACCCACTCACAGAACTATGGGAAGCTCTTAGTTCATTGTGAAGAATCTCTTAGCTCAAAGACTGCAATAGAGATGATTTTCAGGTGTTCGGATTTGGAATATAGAGATCTATTCTCAAGAAGTGATCCTTTTTTACTGATATCAAAAGTGGTTGAAGGTGGTATGCAAATTCCCATTTGCAAAACAGAAGTTATAAAGAATGATCTCAACCCAATGTGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAGGCAAGGACAGTCCTTTGATAATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATCTGATGGGAAAAGTGAAGAGATCTTTGCTGGAGTTGGAAAAGATTCATTCCAGTGGCCAAGGAGAAAAATTATTTCTGCCTAACAAGGTGTTAAACAGCCAGTTATTTGTGGACAAATTCACTGAAAGTGTCCAATATACTTTCCTGGATTATGTGGCTGGGGGATTTGAATTGAACTTTATGGTGGCTGTTGACTTTACAGCTTCAAATGGGAATCCACGCCTTCCAGATTCTTTACATTATCTTGATCCTTCCGGGAGGCAAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAGGTAATACAGTTTTATGACTCAGACAAGCGGTTTCCTGCATGGGGGTTTGGAGCACGACCAATTGATGGCCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGTCATTACTGTGAGGTGGAAGGGATCCAAGGAATTATGACGGCATACACAAGTGCCTTACTTAATGTGTCTCTTGCAGGGCCGACTCTTTTTGGACCTGTCATAAGCAACGCCGCGCTGATTGCCAGCCATTCTGTAGCAAATGGTGGAAGGAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTCTTGTTAAAGCCTCGGACCTACCGTTATCAATTCTTATTGTTGGAGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAACCCCTTGAAAGTTCATCTGGACGCGTTGCTTCCCGTGATATAGTCCAATTTGTTCCGTATCGGGATGTTCAAAGTGGAGAGATTTCAGTAGTTCAAGCGCTTCTAGCGGAGTTACCAACGCAATTTTTAACCTACGTGCGAAGTAGAAACATCCAACCGAGCCTCTAG 1716 0.4359 MGNCCSDVAGGHASIGTTAGDLRHQADTANDAVDYFLRSRGHRGLFSQIELLFSASGLRDRDVLSKSDPMLVLYTKGKNGALEELGRTEVVLNSLDPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNVDVKMLKLEEQQFLGEATCALSEIITRFDQSLTLDLHRDDFITSTHSQNYGKLLVHCEESLSSKTAIEMIFRCSDLEYRDLFSRSDPFLLISKVVEGGMQIPICKTEVIKNDLNPMWKPVFLNIQQVGGKDSPLIIECYNFNSNGKHDLMGKVKRSLLELEKIHSSGQGEKLFLPNKVLNSQLFVDKFTESVQYTFLDYVAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRQNAYQRAIVEVGEVIQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMTAYTSALLNVSLAGPTLFGPVISNAALIASHSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGEPLESSSGRVASRDIVQFVPYRDVQSGEISVVQALLAELPTQFLTYVRSRNIQPSL* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2897 571 CDD C2A_Copine 47 168 - -
Ahy18g2897 571 CDD vWA_copine_like 304 558 IPR010734 -
Ahy18g2897 571 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Ahy18g2897 571 SMART C2_3c 198 297 IPR000008 -
Ahy18g2897 571 SMART C2_3c 47 161 IPR000008 -
Ahy18g2897 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 167 IPR035892 -
Ahy18g2897 571 SUPERFAMILY vWA-like 334 516 IPR036465 -
Ahy18g2897 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 179 289 IPR035892 -
Ahy18g2897 571 PANTHER COPINE 1 570 IPR045052 GO:0005544
Ahy18g2897 571 SMART VWA_4 333 530 IPR002035 -
Ahy18g2897 571 Gene3D C2 domain 51 196 IPR035892 -
Ahy18g2897 571 ProSiteProfiles C2 domain profile. 29 162 IPR000008 -
Ahy18g2897 571 Pfam Copine 354 569 IPR010734 -
Ahy18g2897 571 CDD C2B_Copine 195 290 IPR037768 -
Ahy18g2897 571 PANTHER PROTEIN BONZAI 2 1 570 IPR031116 GO:0005544|GO:0060548
Ahy18g2897 571 Pfam C2 domain 198 294 IPR000008 -
Ahy18g2897 571 Pfam C2 domain 54 154 IPR000008 -
Ahy18g2897 571 Gene3D C2 domain 197 314 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2897 Ahy-Chr18 133717557 133724320 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2897 - - gmx:100807801 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2897 18 133717557 133724320 Ahy18g2897 18 133717557 133724320 ECH
Ahy13g2956 13 119475858 119481114 Ahy18g2897 18 133717557 133724320 PCT
Ahy3g2617 3 117016734 117021986 Ahy18g2897 18 133717557 133724320 PCT
Ahy18g2897 18 133717557 133724320 Ahy13g2956 13 119475858 119481114 PCT
Ahy18g2897 18 133717557 133724320 Ahy3g2617 3 117016734 117021986 PCT