Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1888 ATGGCAAGGCTGCTCCGTAACACTTCACTTATCAGACGCTCTTTCTTACAACCCGATACAGTGAATGCATTTCTTGTTTCTGAAGAAGCTCTTGGTTATAGACTTAAACGAGGAATTTTCGGCATGTCTCAATCTTTGAGCTTTTCAAGTAAAGGTAGAAGGCGCTCTAAGTCAGATGGAAGTGACTCTTGTGAAGAGAACATGTCTAAGAAAGATTTGGCCTTACAACATGCCATGGATCAGATCACTTCTGCTTTTGGAAAGGGATCTATCATGTGGCTTGGTCGTACTATCTCACCAAAAGATGTACCTGTGGTCTCAACTGGTTCATTTGCTCTAGATATAGCGCTCGGTGTTGGTGGTCTTCCAAAGGGACGTGTTGTGGAAATATTTGGACCTGAGGCTTCTGGGAAAACAACTCTTGCTTTACATGTGATTGCTGAGGCACAGAAGCTAGGAGGGTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGTCACTTGCAGAGTCTATTGGTGTTAATACCGAGAACTTGCTTTTATCACAACCAGATTGTGGTGAACAGGCACTTAGTCTTGTAGATACCCTAATTCGGAGTGGTTCACTTGATGTAATTGTTGTCGATAGTGTGGCTGCCCTTGTTCCTAAAGGTGAACTTGATGGTGAGATGGGTGATGCTCACATGGCCATGCAAGCTAGGTTGATGAGCCAGGCGCTTCGGAAGTTGTGCCACTCCTTATCACTCTCGCAGTGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGCTTTCAACTTTTGGGGGTTTTGGTGGGCCGACTGAAGTTACTTGTGGCGGTAATGCACTGAAATTCTATGCTTCTGTTCGGCTAAATATCAAAAGAGTAGGGCTTGTGAAGAAAGGTGAAGAGACTTTAGGGAGCCAGGTTCAAGTTAAAATTGTTAAGAACAAGCTTGCACCTCCATTTAAAACGGCGCAGTTCGAACTCGAGTTTGGGAAGGGTATTTGTAAAGAATCCGAGATTATAGAACTTAGCCTAAAACACAAGCTAATCTCAAAGAATGGTGCATATTTCGGGTATAATGGCCAGAATTTCCATGGCAAGGATGCCTTGAAGAGGTTCCTGGCTGAAAGTGATAACACACAAGAATTAACAGCGAAGCTTCGCGAGAAGCTACTTAACACTGAGAAAGAATCAGTCACGGAGTCACAGGATTCTAGTGACAATGAAACTGCTGTTGCTTTAGAAGCATGA 1260 0.4325 MARLLRNTSLIRRSFLQPDTVNAFLVSEEALGYRLKRGIFGMSQSLSFSSKGRRRSKSDGSDSCEENMSKKDLALQHAMDQITSAFGKGSIMWLGRTISPKDVPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKSLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSLDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRVGLVKKGEETLGSQVQVKIVKNKLAPPFKTAQFELEFGKGICKESEIIELSLKHKLISKNGAYFGYNGQNFHGKDALKRFLAESDNTQELTAKLREKLLNTEKESVTESQDSSDNETAVALEA* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1888 419 Gene3D - 101 404 IPR027417 -
Ahy3g1888 419 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 406 - -
Ahy3g1888 419 ProSitePatterns recA signature. 283 291 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ahy3g1888 419 Pfam recA bacterial DNA recombination protein 74 337 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 CDD recA 70 396 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 TIGRFAM tigrfam_recA: protein RecA 71 391 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 SMART AAA_5 124 298 IPR003593 -
Ahy3g1888 419 PRINTS RecA protein signature 160 189 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 PRINTS RecA protein signature 194 223 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 PRINTS RecA protein signature 232 261 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 PRINTS RecA protein signature 313 342 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 PRINTS RecA protein signature 280 308 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 PRINTS RecA protein signature 366 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 Hamap Protein RecA [recA]. 71 398 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 SUPERFAMILY RecA protein, C-terminal domain 339 392 IPR023400 -
Ahy3g1888 419 PANTHER RECA 1 406 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy3g1888 419 ProSiteProfiles RecA family profile 1. 102 261 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Ahy3g1888 419 ProSiteProfiles RecA family profile 2. 271 342 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ahy3g1888 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 337 IPR027417 -
Ahy3g1888 419 MobiDBLite consensus disorder prediction 397 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1888 Ahy-Chr3 42051631 42056658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1888 K03553 - gmx:100807627 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2270 13 46414352 46419202 Ahy3g1888 3 42051631 42056658 hybridization
Ahy11g3124 11 148895820 148900643 Ahy3g1888 3 42051631 42056658 PCT
Ahy1g1837 1 94841066 94845941 Ahy3g1888 3 42051631 42056658 PCT
Ahy3g1888 3 42051631 42056658 Ahy11g3124 11 148895820 148900643 PCT
Ahy3g1888 3 42051631 42056658 Ahy1g1837 1 94841066 94845941 PCT