Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1837 ATGGCGAGGATGCTTCGCAACGCTTCCATCATCAAGCGCACTCTGTTCCTCCCTCAGGGGTTTAAACTAGGAGTATTGGGCACTTCTCAGGCTCTAAGCTTTTCGTCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTAGTGACTCTGGTGAAGAGAGCATGTCTAAGAAAGAGTTGGCCCTTCAGCAAGCTCTAGATCAGATCACTTCTTCATTTGGAAAGGGATCTATCATGTGGCTTGGCCGCTCTGTCTCACCAAGACATGTACCTGTAGTCTCAAGTGGTTCTTTTGCTCTTGATATAGCACTGGGAATTGGTGGACTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCGGGGAAAACAACTCTTGCTTTACATGTGATTTCAGAGGCACAGAAGCAAGGAGGCTACTGTGTATTTGTTGATGCTGAGCATGCTCTTGATAAGGCACTTGCAGAATCCATTGGTGTGAATACTGAGAACTTGTTGCTTTCACAACCAGATTGTGGTGAACAAGCACTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGACGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGGGAGCTTGATGGTGAAATGGGGGATGCACACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCCCTTCGGAAATTAAGCCACTCCTTGTCAGTTTCTCAATGTATATTGATTTTTATAAACCAGGTAAGGTCAAAGCTTTCTACTTTTGGTGGATTCGGTGGGCCCCAGGAAGTTACTTGTGGTGGCAATGCATTGAAATTCTATGCATCTGTGCGGCTAAATATTAGAAGAATAGGATTTGTGAAGAAAGGGGAAGAGATTTTGGGAAGCCAGGTACTTGTCAAGGTTGTAAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGCAAGGGTATAAATAGAGAATGTGAGATCATAGACTTGAGTGTAAAACACAAAATCATCCTAAAGGCCGGTGCTATGTATTACTTCAATGATAAGAATTTCCGTGGTAGGGATGCTTTTAAGAGTTTCCTGGCCGAGAATCATAGTGCATTTGAAGAACTTCAAATGAAACTCAGGGAGAAGCTTCTTGATGATACTGAGGTGGAAAAGGTACAAGATTCAGATGTGACTAGTGATGTCAAAGAAGAAATTACAACAACACTCGAGTCTACCGATGAAGAATCCTCAGCTGCTGTCGAAGCTTGA 1266 0.436 MARMLRNASIIKRTLFLPQGFKLGVLGTSQALSFSSKGRRRSKSDGSSDSGEESMSKKELALQQALDQITSSFGKGSIMWLGRSVSPRHVPVVSSGSFALDIALGIGGLPKGRVVEIYGPEASGKTTLALHVISEAQKQGGYCVFVDAEHALDKALAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSVSQCILIFINQVRSKLSTFGGFGGPQEVTCGGNALKFYASVRLNIRRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQFGKGINRECEIIDLSVKHKIILKAGAMYYFNDKNFRGRDAFKSFLAENHSAFEELQMKLREKLLDDTEVEKVQDSDVTSDVKEEITTTLESTDEESSAAVEA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1837 421 SMART AAA_5 111 285 IPR003593 -
Ahy1g1837 421 Gene3D - 88 393 IPR027417 -
Ahy1g1837 421 MobiDBLite consensus disorder prediction 36 57 - -
Ahy1g1837 421 PRINTS RecA protein signature 267 295 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 PRINTS RecA protein signature 219 248 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 PRINTS RecA protein signature 147 176 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 PRINTS RecA protein signature 181 210 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 PRINTS RecA protein signature 300 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 PRINTS RecA protein signature 353 370 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 CDD recA 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 MobiDBLite consensus disorder prediction 38 56 - -
Ahy1g1837 421 Pfam recA bacterial DNA recombination protein 61 325 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 MobiDBLite consensus disorder prediction 393 421 - -
Ahy1g1837 421 TIGRFAM tigrfam_recA: protein RecA 58 380 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 SUPERFAMILY RecA protein, C-terminal domain 326 381 IPR023400 -
Ahy1g1837 421 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 411 - -
Ahy1g1837 421 ProSitePatterns recA signature. 270 278 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ahy1g1837 421 Hamap Protein RecA [recA]. 58 385 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 ProSiteProfiles RecA family profile 1. 89 248 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Ahy1g1837 421 MobiDBLite consensus disorder prediction 393 408 - -
Ahy1g1837 421 PANTHER RECA 1 411 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy1g1837 421 ProSiteProfiles RecA family profile 2. 258 329 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ahy1g1837 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 324 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1837 Ahy-Chr1 94841066 94845941 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1837 K03553 - gmx:100781271 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3124 11 148895820 148900643 Ahy1g1837 1 94841066 94845941 hybridization
Ahy1g1837 1 94841066 94845941 Ahy13g2270 13 46414352 46419202 PCT
Ahy1g1837 1 94841066 94845941 Ahy3g1888 3 42051631 42056658 PCT
Ahy13g2270 13 46414352 46419202 Ahy1g1837 1 94841066 94845941 PCT
Ahy3g1888 3 42051631 42056658 Ahy1g1837 1 94841066 94845941 PCT