Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2270 ATGGCAAGGCTGCTCCGTAACACTTCACTTATCAGACGCTCTTTCTTACAACCCGATACAGTGGATGCATTTCTTGTTTCTGAAGAAGCTCTTGCTTATAGACTTAAACGAGGAATTTTCGGCATGTCTCAATCTTTGAGCTTTTCAAGTAAAGGTAGAAGGCGCTCTAAGTCAGATGGAAGTGACTCTTGTGAAGAGAACATGTCTAAGAAAGATTTGGCCTTACAACATGCCATGGATCAGATCACTTCTGCTTTTGGAAAGGGATCTATCATGTGGCTTGGTCGTACTATCTCACCAAAAGATGTACCTGTGGTCTCAACCGGTTCATTTGCTCTAGATATAGCGCTCGGTGTTGGTGGTCTTCCAAAGGGACGTGTTGTGGAAATATTTGGACCTGAGGCTTCTGGGAAAACAACTCTTGCTTTACATGTGATTGCTGAGGCACAGAAGCTAGGAGGGTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGTCACTTGCAGAGTCTATTGGTGTTAATACCGAGAACTTGCTTTTATCACAACCAGATTGTGGTGAACAGGCACTTAGTCTTGTAGATACCCTAATTCGGAGTGGTTCACTTGATGTAATTGTTGTCGATAGTGTGGCTGCCCTTGTTCCTAAAGGTGAACTTGATGGTGAGATGGGTGATGCTCACATGGCCATGCAGGCTAGGTTGATGAGCCAGGCACTTCGGAAGTTGTGCCACTCCTTGTCACTCTCACAGTGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGCTTTCAACTTTTGGGGGGTTTGGTGGGCCGACTGAAGTTACTTGCGGCGGTAATGCACTGAAATTCTATGCTTCTGTTCGGCTAAATATCAAAAGAGTAGGGCTTGTGAAGAAAGGTGAAGAGACTTTAGGGAGCCAGGTTCAAGTTAAAATTGTTAAGAACAAGCTTGCGCCTCCATTTAAAACAGCGCAGTTCGAACTCGAGTTTGGGAAGGGTATTTGTAAAGAATCCGAGATTATAGAACTTAGCCTAAAACACAAGCTAATCTCAAAGAATGGTGCATATTTCGGGTATAATGGCCAGAATTTCCATGGCAAGGATGCCCTGAAGAGGTTCCTGGCTGAAAGTGATAACACACAAGAATTAACAGCGAAGCTCCGCGAGAAGCTACTTGACACCGAGAAAGAATCAGTCACGGAGTCACAGGAGGTGAATCGAGAGTCTCCGGATTCTAGTGACAATGAAACTGCTGTTGCTTTAGAAGCATGA 1281 0.4411 MARLLRNTSLIRRSFLQPDTVDAFLVSEEALAYRLKRGIFGMSQSLSFSSKGRRRSKSDGSDSCEENMSKKDLALQHAMDQITSAFGKGSIMWLGRTISPKDVPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKSLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSLDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRVGLVKKGEETLGSQVQVKIVKNKLAPPFKTAQFELEFGKGICKESEIIELSLKHKLISKNGAYFGYNGQNFHGKDALKRFLAESDNTQELTAKLREKLLDTEKESVTESQEVNRESPDSSDNETAVALEA* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2270 426 Hamap Protein RecA [recA]. 71 398 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 337 IPR027417 -
Ahy13g2270 426 TIGRFAM tigrfam_recA: protein RecA 71 391 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 SUPERFAMILY RecA protein, C-terminal domain 339 392 IPR023400 -
Ahy13g2270 426 ProSitePatterns recA signature. 283 291 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ahy13g2270 426 Gene3D - 101 405 IPR027417 -
Ahy13g2270 426 CDD recA 70 396 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 Pfam recA bacterial DNA recombination protein 74 337 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 PRINTS RecA protein signature 160 189 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 PRINTS RecA protein signature 194 223 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 PRINTS RecA protein signature 232 261 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 PRINTS RecA protein signature 313 342 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 PRINTS RecA protein signature 280 308 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 PRINTS RecA protein signature 366 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 MobiDBLite consensus disorder prediction 397 426 - -
Ahy13g2270 426 SMART AAA_5 124 298 IPR003593 -
Ahy13g2270 426 ProSiteProfiles RecA family profile 1. 102 261 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Ahy13g2270 426 ProSiteProfiles RecA family profile 2. 271 342 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ahy13g2270 426 PANTHER RECA 1 410 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ahy13g2270 426 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 410 - -
Ahy13g2270 426 MobiDBLite consensus disorder prediction 397 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2270 Ahy-Chr13 46414352 46419202 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2270 K03553 - gmx:100798983 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2270 13 46414352 46419202 Ahy3g1888 3 42051631 42056658 hybridization
Ahy11g3124 11 148895820 148900643 Ahy13g2270 13 46414352 46419202 PCT
Ahy1g1837 1 94841066 94845941 Ahy13g2270 13 46414352 46419202 PCT
Ahy13g2270 13 46414352 46419202 Ahy11g3124 11 148895820 148900643 PCT
Ahy13g2270 13 46414352 46419202 Ahy1g1837 1 94841066 94845941 PCT