Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1849 ATGATGTACGAACACACACATAATCATCTGGTTCATCATCAGCAACCAGTAACGATGACTATGGATACCATGAAGATGGATATGATAAGAAGGAATAAGAGGGAGAGGAACAAAGAATCCAACAACAACAACAACAACAGCAACAACAACAAAGACAACAAGCTTCGCACCGTTGACTTGAGCTGCATGTCGTTGGAGTCTCTCCCTATTCCTTCTCTTGATTTAGCTACCATTTCCAAGTTGGACCTTTCCAACAACAATCTCCAGAATATTCCGGAGTCGTTAACGGCGAGACTACTGAACTTGACGGTGTTGGACGTGCACTCGAACCAGCTAAGGTCCCTCCCAAATTCAATTGGTTGCCTCTCTAAGCTTAAGATTTTGAATGTCTCTGCCAACTTCATCCAATCCCTTCCTCAAACTATTGAAAATTGCAGCAGAGGCTTAGAAGAACTGAATGCTAACTTCAACAAGTTAAGCAAGTTGCCGGATACAATAGGGTTTGAGCTGATAAACCTCCAGAAGCTCTCCGTCAACTCCAACCAGCTTGTGTTCCTTCCAAGCTCCACCTCTCACCTTATGGCTCTCAAGGTCCTCGACGCGCGCCTTAACTGCTTAAGGTCTCTTCCTGAAGACCTTGAGAACCTAGTCAACCTTGAGACGCTGAATGTGAGCCAGAACTTCCGGTACTTGGACACACTACCCTACTCCATAGGGCTTCTATTGTCCCTCACTGAGCTTGATGTTAGCTACAACAACATCAAGACTTTGCCCAATTCCATTGGGTGCCTCCAGAAGCTCCAGAAGTTGTGTGTTGATGGGAACCCGCTTGCTTCGCCGCCATTGGAGGTGGTTGAGCAAGGGTTAAATGTGGTGAAGGAGTTCTTGTGTCATAAGATGAACTCGTCAGGGGACCAGAGTAGCAGAAAGAAGAAGTCGTGGGTCAAGAATTTCGTCAAGTGTGGAACATTCCAAGGACGCATCAATAGTGGTATGAAACGGCCGCAACATGACGGTTTCACCAAGCTTAAGCATCAGTCCATCCATGGTCTCGCCTCGCCTGGTGGCTTCATGGGGATGCTCTCACCTCTTCGCATCTTCTCACCTCGTCGTTCCTTTAGTTGA 1125 0.4684 MMYEHTHNHLVHHQQPVTMTMDTMKMDMIRRNKRERNKESNNNNNNSNNNKDNKLRTVDLSCMSLESLPIPSLDLATISKLDLSNNNLQNIPESLTARLLNLTVLDVHSNQLRSLPNSIGCLSKLKILNVSANFIQSLPQTIENCSRGLEELNANFNKLSKLPDTIGFELINLQKLSVNSNQLVFLPSSTSHLMALKVLDARLNCLRSLPEDLENLVNLETLNVSQNFRYLDTLPYSIGLLLSLTELDVSYNNIKTLPNSIGCLQKLQKLCVDGNPLASPPLEVVEQGLNVVKEFLCHKMNSSGDQSSRKKKSWVKNFVKCGTFQGRINSGMKRPQHDGFTKLKHQSIHGLASPGGFMGMLSPLRIFSPRRSFS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1849 374 ProSiteProfiles Leucine-rich repeat profile. 101 122 IPR001611 GO:0005515
Ahy3g1849 374 SMART LRR_bac_2 99 118 - -
Ahy3g1849 374 SMART LRR_bac_2 193 212 - -
Ahy3g1849 374 SMART LRR_bac_2 241 260 - -
Ahy3g1849 374 SMART LRR_bac_2 75 94 - -
Ahy3g1849 374 SMART LRR_bac_2 146 165 - -
Ahy3g1849 374 SMART LRR_bac_2 264 282 - -
Ahy3g1849 374 SMART LRR_bac_2 170 189 - -
Ahy3g1849 374 SMART LRR_bac_2 122 141 - -
Ahy3g1849 374 SMART LRR_bac_2 216 237 - -
Ahy3g1849 374 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 2 360 - -
Ahy3g1849 374 Coils Coil 142 162 - -
Ahy3g1849 374 Gene3D Ribonuclease Inhibitor 2 166 IPR032675 -
Ahy3g1849 374 Gene3D Ribonuclease Inhibitor 169 296 IPR032675 -
Ahy3g1849 374 ProSiteProfiles Leucine-rich repeat profile. 243 264 IPR001611 GO:0005515
Ahy3g1849 374 SUPERFAMILY L domain-like 50 318 - -
Ahy3g1849 374 ProSiteProfiles Leucine-rich repeat profile. 77 98 IPR001611 GO:0005515
Ahy3g1849 374 MobiDBLite consensus disorder prediction 35 54 - -
Ahy3g1849 374 Pfam Leucine rich repeat 78 133 IPR001611 GO:0005515
Ahy3g1849 374 SMART LRR_typ_2 75 98 IPR003591 -
Ahy3g1849 374 SMART LRR_typ_2 241 264 IPR003591 -
Ahy3g1849 374 SMART LRR_typ_2 193 216 IPR003591 -
Ahy3g1849 374 SMART LRR_typ_2 99 121 IPR003591 -
Ahy3g1849 374 SMART LRR_typ_2 147 169 IPR003591 -
Ahy3g1849 374 SMART LRR_typ_2 170 192 IPR003591 -
Ahy3g1849 374 SMART LRR_typ_2 122 145 IPR003591 -
Ahy3g1849 374 PANTHER LEUCINE-RICH REPEAT-CONTAINING 2 360 - -
Ahy3g1849 374 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1849 Ahy-Chr3 38792512 38796750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1849 98 278 Receptor kinase-like Gene Family AT3G11080 36.757 2.34e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1849 - - lja:Lj6g3v1315120.1 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2149 13 40838816 40842548 Ahy3g1849 3 38792512 38796750 hybridization
Ahy11g3092 11 148576783 148578949 Ahy3g1849 3 38792512 38796750 PCT
Ahy1g1878 1 95320149 95322302 Ahy3g1849 3 38792512 38796750 PCT
Ahy3g1849 3 38792512 38796750 Ahy11g3092 11 148576783 148578949 PCT
Ahy3g1849 3 38792512 38796750 Ahy1g1878 1 95320149 95322302 PCT