Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2149 ATGATGTACGAACACACACATAATCATCTGGTTCATCATCAGCAACCAGTAACGATGACTATGGATACCATGAAGATGGATATGATAAGAAGGAATAAGAGGGAGAGGAACAAAGAATCCAACAACAACAACAACAACAACGAAGACAACAACAATAAGCTTCGCACCGTTGACTTGAGTTGCATGTCGTTGGAGTCTCTCCCTATTCCTTCTCTTGATTTAGCTACCATTTCCAAGTTGGACCTTTCCAACAACAATCTCCAGAATATTCCGGAGTCGTTAACGGCGAGACTACTGAACTTGACGGTGTTGGACGTGCACTCGAACCAGCTAAGGTCCCTCCCAAATTCAATTGGTTGCCTCTCTAAGCTTAAGATTTTGAATGTCTCTGCCAACTTCATCCAATCCCTTCCTCAAACTATTGAAAATTGCAGAGCCTTAGAAGAACTGAATGCTAACTTCAACAAGTTAAGCAAGTTGCCGGATACAATAGGGTTTGAGCTCATAAACCTCCAGAAGCTGTCCGTCAACTCCAACCAGCTTGTGTTCCTTCCAAGCTCCACCTCTCACCTTATGGCCCTCAAGGTCCTCGACGCGCGCCTTAACTGCTTAAGGTCTCTGCCCGAAGACCTTGAGAACCTAGTCAACCTTGAGACGCTCAATGTGAGCCAGAACTTCCGGTACTTGGACACACTACCCTACTCCATAGGGCTTCTATTGTCCCTCACTGAGCTTGATGTTAGCTACAACAACATCAAGACTTTGCCCAATTCCATTGGGTGCCTCCAGAAGCTCCAGAAGTTGTGTGTCGATGGGAACCCGCTTGCTTCGCCGCCATTGGAGGTGGTTGAGCAAGGGTTAAATGTGGTGAAGGAGTTCTTGTGTCATAAGATGAACTCGTCAGGGGACCAGAGTAGCAAAAAGAAGAAGTCGTGGGTGAAGAATTTCGTCAAGTGTGGAACATTCCAAGGACGCATCAATAGTGGTATGAAACGGCCGCAACATGACGGTTTCACCAAGCTTAAGCATCAGTCCATCGATGGTCTCGCCTCGCCTGGCGGCTTCATGGGGATGCTCTCACCTCTTCGCATCTTCTCACCTCGTCGTTCCTTTAGTTGA 1119 0.4701 MMYEHTHNHLVHHQQPVTMTMDTMKMDMIRRNKRERNKESNNNNNNNEDNNNKLRTVDLSCMSLESLPIPSLDLATISKLDLSNNNLQNIPESLTARLLNLTVLDVHSNQLRSLPNSIGCLSKLKILNVSANFIQSLPQTIENCRALEELNANFNKLSKLPDTIGFELINLQKLSVNSNQLVFLPSSTSHLMALKVLDARLNCLRSLPEDLENLVNLETLNVSQNFRYLDTLPYSIGLLLSLTELDVSYNNIKTLPNSIGCLQKLQKLCVDGNPLASPPLEVVEQGLNVVKEFLCHKMNSSGDQSSKKKKSWVKNFVKCGTFQGRINSGMKRPQHDGFTKLKHQSIDGLASPGGFMGMLSPLRIFSPRRSFS* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2149 372 SUPERFAMILY L domain-like 49 284 - -
Ahy13g2149 372 Pfam Leucine rich repeat 77 132 IPR001611 GO:0005515
Ahy13g2149 372 Gene3D Ribonuclease Inhibitor 166 299 IPR032675 -
Ahy13g2149 372 ProSiteProfiles Leucine-rich repeat profile. 76 97 IPR001611 GO:0005515
Ahy13g2149 372 PANTHER LEUCINE-RICH REPEAT-CONTAINING 2 358 - -
Ahy13g2149 372 Coils Coil 30 50 - -
Ahy13g2149 372 SMART LRR_typ_2 74 97 IPR003591 -
Ahy13g2149 372 SMART LRR_typ_2 239 262 IPR003591 -
Ahy13g2149 372 SMART LRR_typ_2 191 214 IPR003591 -
Ahy13g2149 372 SMART LRR_typ_2 145 167 IPR003591 -
Ahy13g2149 372 SMART LRR_typ_2 98 120 IPR003591 -
Ahy13g2149 372 SMART LRR_typ_2 121 144 IPR003591 -
Ahy13g2149 372 SMART LRR_typ_2 168 190 IPR003591 -
Ahy13g2149 372 ProSiteProfiles Leucine-rich repeat profile. 241 262 IPR001611 GO:0005515
Ahy13g2149 372 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 2 358 - -
Ahy13g2149 372 SMART LRR_bac_2 168 187 - -
Ahy13g2149 372 SMART LRR_bac_2 191 210 - -
Ahy13g2149 372 SMART LRR_bac_2 239 258 - -
Ahy13g2149 372 SMART LRR_bac_2 262 280 - -
Ahy13g2149 372 SMART LRR_bac_2 74 93 - -
Ahy13g2149 372 SMART LRR_bac_2 144 163 - -
Ahy13g2149 372 SMART LRR_bac_2 121 140 - -
Ahy13g2149 372 SMART LRR_bac_2 214 235 - -
Ahy13g2149 372 SMART LRR_bac_2 98 117 - -
Ahy13g2149 372 Gene3D Ribonuclease Inhibitor 2 165 IPR032675 -
Ahy13g2149 372 ProSiteProfiles Leucine-rich repeat profile. 100 121 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2149 Ahy-Chr13 40838816 40842548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2149 74 277 Receptor kinase-like Gene Family AT2G15080 34.434 5.03e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2149 - - lja:Lj6g3v1315120.1 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2149 13 40838816 40842548 Ahy13g2149 13 40838816 40842548 ECH
Ahy13g2149 13 40838816 40842548 Ahy3g1849 3 38792512 38796750 hybridization
Ahy11g3092 11 148576783 148578949 Ahy13g2149 13 40838816 40842548 PCT
Ahy1g1878 1 95320149 95322302 Ahy13g2149 13 40838816 40842548 PCT
Ahy13g2149 13 40838816 40842548 Ahy11g3092 11 148576783 148578949 PCT
Ahy13g2149 13 40838816 40842548 Ahy1g1878 1 95320149 95322302 PCT