Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1878 ATGTTGTACGTGCAACAGCAGCCGATGATTAAGAAGGCGGAGAGGAGCGGCGGCAGCAGCAGCAGCTGGAGCAGAGGCATAGAGGAAGAGAGGCTTGAGATTGTGGACCTCAGTGGCATGTCTTTGGACTCCCTTCCCAACCCTTCTCTTAACTTGGCCATCATTTGCAAGTTGGACCTCTCTAACAACAATCTACAGAATATTCCGGAGTCGTTGACAGCAAGATTGGTGAATTTGGTGGTGCTGGATGTGCACTCGAACCAGCTTAGAAGGCTGCCAAACTCCATTGGCTGCCTGTGTAAACTGAAGGTCTTGAATGTGGCTGGAAACATGATCCAATACCTTCCAAAAACCATTGACAATTGCAAATCATTGGAGGAACTAAACGCCAACTTCAACAAACTGATACAGCTTCCAGAAAATATTGGTTTGGAACTCAGAAAGCTGAAGAAGTTATCAGTAAACTCCAATAAACTACTCTTCCTTCCACGCTCCACCTCAAACCTCACCTCTCTCAAGCTCCTGGACGCCCGCCTCAACTGCCTCCGCTCTCTCCCCGAAGACCTCGAAAAACTCGTCAGCCTTGAAACCCTCAACATCAGCCAGAACTTTCACTTCCTCCGTTCTCTCCCTTGCTCCCTCGGTCTTATCTTCTCCCTCGTCGAACTCGACATCAGCTACAACAGAATCACCTCCTTGCCTCCTTCCATTGCCTGTCTCAACAAGCTCCAGAAGCTTTGTGTCGATGGTAATCCGCTCATGTCGCCGCCACTAGAAGTGGTGGAACAAGGCTTATATGCCGTGAAGGGGTACCTCTATCAGAAGATGAACTCTCCGTCGTCGTCGTCGTCGGAGAGCCCATCAACGAAGAAGAAGTCATGGGTTGGAAAGTTGGTGAAGTACAAAACGTTCAGTAATGGAGGAGAAACGAAGAGGAGCAGCAGCCATGAAGAACGCGAAGCTTTCGTAATGCCGGATTATAAGCCCATTGATACTCTTGCTTCTCCGCGTTACATGGGAATCTTCTCACCTCGCCGCCTCTTCTCGCCTCGTAATTACTTCACCAACTACTCATGA 1077 0.4912 MLYVQQQPMIKKAERSGGSSSSWSRGIEEERLEIVDLSGMSLDSLPNPSLNLAIICKLDLSNNNLQNIPESLTARLVNLVVLDVHSNQLRRLPNSIGCLCKLKVLNVAGNMIQYLPKTIDNCKSLEELNANFNKLIQLPENIGLELRKLKKLSVNSNKLLFLPRSTSNLTSLKLLDARLNCLRSLPEDLEKLVSLETLNISQNFHFLRSLPCSLGLIFSLVELDISYNRITSLPPSIACLNKLQKLCVDGNPLMSPPLEVVEQGLYAVKGYLYQKMNSPSSSSSESPSTKKKSWVGKLVKYKTFSNGGETKRSSSHEEREAFVMPDYKPIDTLASPRYMGIFSPRRLFSPRNYFTNYS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1878 358 MobiDBLite consensus disorder prediction 1 24 - -
Ahy1g1878 358 SMART LRR_bac_2 52 71 - -
Ahy1g1878 358 SMART LRR_bac_2 122 141 - -
Ahy1g1878 358 SMART LRR_bac_2 219 236 - -
Ahy1g1878 358 SMART LRR_bac_2 146 165 - -
Ahy1g1878 358 SMART LRR_bac_2 169 188 - -
Ahy1g1878 358 SMART LRR_bac_2 192 213 - -
Ahy1g1878 358 SMART LRR_bac_2 76 95 - -
Ahy1g1878 358 SMART LRR_bac_2 99 118 - -
Ahy1g1878 358 ProSiteProfiles Leucine-rich repeat profile. 78 99 IPR001611 GO:0005515
Ahy1g1878 358 SUPERFAMILY L domain-like 21 258 - -
Ahy1g1878 358 Pfam Leucine rich repeat 57 112 IPR001611 GO:0005515
Ahy1g1878 358 Pfam Leucine rich repeat 147 203 IPR001611 GO:0005515
Ahy1g1878 358 Gene3D Ribonuclease Inhibitor 141 272 IPR032675 -
Ahy1g1878 358 Gene3D Ribonuclease Inhibitor 3 140 IPR032675 -
Ahy1g1878 358 PANTHER LEUCINE-RICH REPEAT-CONTAINING 21 350 - -
Ahy1g1878 358 SMART LRR_typ_2 52 75 IPR003591 -
Ahy1g1878 358 SMART LRR_typ_2 169 192 IPR003591 -
Ahy1g1878 358 SMART LRR_typ_2 217 240 IPR003591 -
Ahy1g1878 358 SMART LRR_typ_2 146 168 IPR003591 -
Ahy1g1878 358 SMART LRR_typ_2 99 122 IPR003591 -
Ahy1g1878 358 SMART LRR_typ_2 76 98 IPR003591 -
Ahy1g1878 358 SMART LRR_typ_2 123 145 IPR003591 -
Ahy1g1878 358 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 21 350 - -
Ahy1g1878 358 ProSiteProfiles Leucine-rich repeat profile. 219 240 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1878 Ahy-Chr1 95320149 95322302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1878 53 246 Receptor kinase-like Gene Family AT4G13920 33.498 1.19e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1878 - - gmx:100783239 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3092 11 148576783 148578949 Ahy1g1878 1 95320149 95322302 hybridization
Ahy1g1878 1 95320149 95322302 Ahy13g2149 13 40838816 40842548 PCT
Ahy1g1878 1 95320149 95322302 Ahy3g1849 3 38792512 38796750 PCT
Ahy13g2149 13 40838816 40842548 Ahy1g1878 1 95320149 95322302 PCT
Ahy3g1849 3 38792512 38796750 Ahy1g1878 1 95320149 95322302 PCT