Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1039 ATGGAAATGATGCCATACCAGCTTTCCAGGTTACCTTACCATGATTCTCTCAAACTTCTGGAGGCTGATATACAACATGCCAATTCTTTGGCTGCAGCAATTCCAAGAACAGAAGGTGGAACTGTTCTTCAAATGAAATTGGTTTATAATCACTTGGCTCCTTTAGTTCTCTTGTTTCTACAGTGGATGGATTGTTCCTGTGCTAGCTTTCTACACAGATATCTCAATCTCTTCCACATAGTTATATACAAGGTACACAATGATGGTAGAAACATGTCTAGTCATGGAAGGAAAGCTACCATAGGGGACTTTTATGCTGTTATATTGCCATCTCTCCAGCGGCTTCATGGTAGCTTGGAGAAGTTGGAGACTTCGAAAGAAGGCCAATCATCGAGCATGGAACATTCAAGTTATGGCAAGAAGATGATTGTTGAAGGTGATGGGAAACTAACCAATGTTGACTTGCAAAGAGAGGATGAATGTGATATTTGCTTAGAGCCTTGCACCAAAATGGTCCTGCCTAATTGTTGCCATGCCATGTGTATCCGATGCTACCGCAAGTGGAACACTCGGTCGCAGTCTTGCCCTTTTTGCCGCGGTAGCTTGAGGAGGGTTAACTCTGAGGATCTTTGGGTGCTAACTTGCAATGAAGATGTTGTTGATGCTGAAACAGTTTCTAAGGAAGACTTGTGGCGTTTCTACCTTTATATCAATAAGCTACCAAAACATCACCCAGAAGCACTTTTTGTAATGTACTATGAGTATCTCATTTGA 774 0.4186 MEMMPYQLSRLPYHDSLKLLEADIQHANSLAAAIPRTEGGTVLQMKLVYNHLAPLVLLFLQWMDCSCASFLHRYLNLFHIVIYKVHNDGRNMSSHGRKATIGDFYAVILPSLQRLHGSLEKLETSKEGQSSSMEHSSYGKKMIVEGDGKLTNVDLQREDECDICLEPCTKMVLPNCCHAMCIRCYRKWNTRSQSCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSKEDLWRFYLYINKLPKHHPEALFVMYYEYLI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1039 257 SUPERFAMILY RING/U-box 152 203 - -
Ahy20g1039 257 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 257 - -
Ahy20g1039 257 Pfam Ring finger domain 159 199 IPR001841 -
Ahy20g1039 257 SMART ring_2 161 198 IPR001841 -
Ahy20g1039 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 210 IPR013083 -
Ahy20g1039 257 PANTHER RING FINGER PROTEIN 41, 151 6 257 - -
Ahy20g1039 257 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Ahy20g1039 257 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1039 Ahy-Chr20 15808065 15810356 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1039 - - gmx:100790422 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1039 20 15808065 15810356 Ahy20g1039 20 15808065 15810356 ECH
Ahy20g1039 20 15808065 15810356 Ahy10g0749 10 9062319 9064578 hybridization
Ahy20g1039 20 15808065 15810356 Ahy13g4437 13 144464843 144467113 PCT
Ahy13g4437 13 144464843 144467113 Ahy20g1039 20 15808065 15810356 PCT