Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0427 ATGGAGTTGTTTTCCTCTTCCCTCACTGCTACTACTATACTACTCTATGTAGTAACGCCATTATTGTACTTGTGCTTCCTTGTGTGGAAGGTGGTGAATCACAAAAGGGACCATGAATGCTACATTTTAGGGTACCAATGCTACAAGCCAGGCGATGATAGAAAGCTTGGAACTCAATGCAGCGGCAGCATCATATCCAGGAACAAAACCTTGGCTCTCAACGACTTCAAGTTCCTTCTCAAAGCCATTGTCAGATCCGGCCTTGGCGAAGAAACTTACGTTCCAAGGAACTTCCTCCAAGGCCGCGAGTCTAACCCTACCGTAAACGACGCCGTTTCGGAAATGGACGAGTTTTTCCACGACTCGATTGCCAAACTCCTCGCCAAAACCGGCGTCTCCGCCTCCGACATCGACGTCCTGGTGGTCAACGTCTCCATGTTCCCGTCAGTCCCGTCGCTGACTTCAAGAATCATCAACCACTACAAGATGAGGGACGACGTGAAGGCTTTCAACCTCACCGGCATGGGGTGCAGTGCAAGCTTGGTATCTCTTGACGTAGTCCAGAACATTCTCAAGTCGCAGAGAAACAAGTGTGCTTTGTTGGTTACTTCAGAGTCCTTGAGCCCTAACTGGTACTCAGGGAACGACAGATCCATGGTCCTCGCCAATTGTTTGTTTCGAACCGGAGGATGCGCTATTCTTTTGAGTAACAAGAGTTGGTTGAAGCATAAAGCCATATTCAAGCTCAAGTGCTTGGTGAGAACACACCATGGCGCCAAAGATGATGCATACGGTTGCTGCAACCAGAAGGAGGACGATGAAGGTAGGCTTGGGTTCTACCTAGGGAAGAATCTCCCTAAGGCAGCAACAAGAGCCTTTGTTGACAATTTAAGAGTCTTATCCCCCAAGATTTTACCAGCTAGGGAGATGCTTAGATTCTTACTCGTTTCCCTCCTCAGAAAATTTAAATCTGCCACGTCAGCACCTAAAGGAGCAGCTCTAGCAACAAACACAAAATATGGTAATAAATCGCCTTTGAATTTAAAGACCGGAGTAGATCATTTCTGTTTGCACACCGGAGGGAAGGCGGTTATTGATGGGATAGGGATGAGTTTGGATCTGACTGAGTATGATCTGGAGCCGGCGAGGATGACGCTGCACCGGTTTGGAAACACGTCAGCAAGCAGCTTGTGGTATGTGTTAGCGTACATGGAAGCTAAGAGGAGGCTCAAGAGAGGGGACAGGGTATTGATGATAAGCTTTGGTGCGGGATTTAAATGTAACAGCTGTTTGTGGCAAGTAATGAAGGATGTTGAGGATAGGAATGTGTGGGATGAATGCATTGATCACTATCCACCACACTCCCTTGCCAACCCTTTCATGGAGCAGTACGGTTGGATCAATGCTGTTGAGGATCCAACCAACTTCAACCTTCTTAGTCAGCCTGTTACTAACTAG 1458 0.4753 MELFSSSLTATTILLYVVTPLLYLCFLVWKVVNHKRDHECYILGYQCYKPGDDRKLGTQCSGSIISRNKTLALNDFKFLLKAIVRSGLGEETYVPRNFLQGRESNPTVNDAVSEMDEFFHDSIAKLLAKTGVSASDIDVLVVNVSMFPSVPSLTSRIINHYKMRDDVKAFNLTGMGCSASLVSLDVVQNILKSQRNKCALLVTSESLSPNWYSGNDRSMVLANCLFRTGGCAILLSNKSWLKHKAIFKLKCLVRTHHGAKDDAYGCCNQKEDDEGRLGFYLGKNLPKAATRAFVDNLRVLSPKILPAREMLRFLLVSLLRKFKSATSAPKGAALATNTKYGNKSPLNLKTGVDHFCLHTGGKAVIDGIGMSLDLTEYDLEPARMTLHRFGNTSASSLWYVLAYMEAKRRLKRGDRVLMISFGAGFKCNSCLWQVMKDVEDRNVWDECIDHYPPHSLANPFMEQYGWINAVEDPTNFNLLSQPVTN* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0427 485 CDD CHS_like 21 432 - -
Ahy18g0427 485 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 352 433 IPR013747 -
Ahy18g0427 485 Gene3D - 84 434 IPR016039 GO:0016746
Ahy18g0427 485 PANTHER 3-KETOACYL-COA SYNTHASE 14 473 - -
Ahy18g0427 485 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 466 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ahy18g0427 485 Pfam FAE1/Type III polyketide synthase-like protein 34 321 IPR013601 GO:0006633|GO:0016020|GO:0016747
Ahy18g0427 485 PANTHER 3-KETOACYL-COA SYNTHASE 14 473 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ahy18g0427 485 SUPERFAMILY Thiolase-like 33 435 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0427 Ahy-Chr18 3642193 3644296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0427 28 478 Acyl Lipid Metabolism Gene Families AT2G28630 65.864 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0427 K15397 - gmx:100776947 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0427 18 3642193 3644296 Ahy18g0427 18 3642193 3644296 ECH
Ahy18g0427 18 3642193 3644296 Ahy13g0409 13 4270738 4272860 ECH
Ahy18g0427 18 3642193 3644296 Ahy8g1233 8 27714334 27716358 hybridization
Ahy18g0427 18 3642193 3644296 Ahy13g0409 13 4270738 4272860 PCT
Ahy13g0409 13 4270738 4272860 Ahy18g0427 18 3642193 3644296 PCT