LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy17g1873	ATGAGTGTGGATTTAAAGAAAACTACCTCTAATGGCCATGAGAAAATGTTAAGCTTAGAAGAGCAGCAGTCCCTGATAATGGAGGTCAGAAGGTTGATTGGACCACTGTCTGGTAAGGCATCTCTTTATTGTTCTGATGCATCCATTGCAAGGCATTTGAGGGCACGGAATTGGAATGTCAAGAAGGCGGTTAAAATGTTGAAACAGACACTAAAATGGAGAGCAGAATACAAACCAGAAGAGATCCGATGGGAAGATGTTGCTCAGGAAGCGGATACTGGAAAGATCTACAGAACAGATTACGTTGACAAGCATGGGAGAACAGTCCTTGTCATGAGACCTAGCCGCCAGAACTCGAAGTCGATAAAAGGACAGGTTAAATATTTGGTATACTGCATGGAGAATGCTATTCTAAATCTTCCACCACATCAGGAACAGATGGTCTGGCTAATTGACTTCCAGGGTTTCAATTTGTCACATATATCAGTCAGGGTGACCCGTGAAACTGCACATATATTGCAAGATCAGTATCCTGAACGTCTGGGTCTTGCAATACTGTACAATCCACCTAAGTTCTTTGAACCATTCTTCACGATGGTAAAGCCCCTATTGGAGCCTAAGACTTACAATAAAGTGAAGTTTGTTTACGCTGATGATAACAATACCAAGAAGATCATGGAGGATTTATTTGATTTGGACCAACTTGAATCTGCATTTGGCGGGAAGAATGACACAGGGTTTGACATAAACAGGTATGCGGAGAGGATGAAAGAGGACGACAAGAAGATTCCCTCTTTCTGGACAGGGGAGAACTCTCTGTCATCAGTTCCAGTTGCTCCTCCATCGTTAGATTCAATTAAGTTAGATTCTGATTCTGACCCATCTGACAACGAGAAGAGAGAATCTTCCCCTGACTTAGACCCTGACCCTAGAATGGACACCGAGATCGTTAACCATAATGATGATAATGTCTTGGTTAATCAAGAGTATGGAAACGCCAGAGTCGATACGCATTAA	1017	0.4238	MSVDLKKTTSNGHEKMLSLEEQQSLIMEVRRLIGPLSGKASLYCSDASIARHLRARNWNVKKAVKMLKQTLKWRAEYKPEEIRWEDVAQEADTGKIYRTDYVDKHGRTVLVMRPSRQNSKSIKGQVKYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVRVTRETAHILQDQYPERLGLAILYNPPKFFEPFFTMVKPLLEPKTYNKVKFVYADDNNTKKIMEDLFDLDQLESAFGGKNDTGFDINRYAERMKEDDKKIPSFWTGENSLSSVPVAPPSLDSIKLDSDSDPSDNEKRESSPDLDPDPRMDTEIVNHNDDNVLVNQEYGNARVDTH*	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy17g1873	338	SMART	CRAL_TRIO_N_2	45	70	IPR011074	-
	Ahy17g1873	338	Pfam	CRAL/TRIO domain	94	241	IPR001251	-
	Ahy17g1873	338	Gene3D	-	3	270	IPR036865	-
	Ahy17g1873	338	MobiDBLite	consensus disorder prediction	320	338	-	-
	Ahy17g1873	338	MobiDBLite	consensus disorder prediction	264	338	-	-
	Ahy17g1873	338	CDD	SEC14	92	242	IPR001251	-
	Ahy17g1873	338	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	84	247	IPR001251	-
	Ahy17g1873	338	SUPERFAMILY	CRAL/TRIO N-terminal domain	20	86	IPR036273	-
	Ahy17g1873	338	SUPERFAMILY	CRAL/TRIO domain	84	262	IPR036865	-
	Ahy17g1873	338	SMART	sec14_4	90	244	IPR001251	-
	Ahy17g1873	338	Pfam	CRAL/TRIO, N-terminal domain	45	68	IPR011074	-
	Ahy17g1873	338	PANTHER	CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED	1	303	-	-
	Ahy17g1873	338	PANTHER	GH16843P	1	303	-	-
	Ahy17g1873	338	MobiDBLite	consensus disorder prediction	289	318	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy17g1873	Ahy-Chr17	58839359	58846399	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy17g1873	-		-	gmx:100780151	514.612

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy17g1873	17	58839359	58846399	Ahy17g1873	17	58839359	58846399	ECH
	Ahy17g1873	17	58839359	58846399	Ahy8g0637	8	12546500	12549376	hybridization
	Ahy17g2930	17	129151341	129154123	Ahy17g1873	17	58839359	58846399	PCT
	Ahy7g1625	7	56194976	56201941	Ahy17g1873	17	58839359	58846399	PCT
	Ahy17g1873	17	58839359	58846399	Ahy17g2930	17	129151341	129154123	PCT
	Ahy17g1873	17	58839359	58846399	Ahy7g1625	7	56194976	56201941	PCT