Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3131 ATGGCACACACTAGCTTAATAATGCCGAACCCTAACCACGCCTCCTCTCCTTCTCGATCACCGTTGTCGATTCAATTCTCTTCGATCCCAGCCATGGACCGCATTTTCTCCAGTAAGAGTTTCCTTTATAATAGGCTTCGATCTCAGCCTCTCAGCCTTACTGTTCTCAAATTGGATGGATCTACCTTCGATATTCAAGTTGAGAAGACAGCAACTATTGCTGAGCTTAAGGAGGCGGTGAAGGTGGTGTTCAGTCACATGCCTCAGAAGGGGCCAGGGAAGATTTCATGGCCACATGTTTGGCGGCAGTTTTGCTTATGCTATGATGGACAGAAGCTTGTTAAAGATGACGATTACCTGAGAAATTATGGCATCAAGGACGGTGATCAGCTTCGTTTCATCCGCCATGTCTCAAACTATTATGGTGCTCGAAGAAGAAAGCGATCAAAGAAGCGAGTTTTCCATTTTAAACAGCACAGCAGGTCATCCTCGCAAGTGAATAGCTATCAACCTAAAGAACATAGTGATGATGATGAAGAAGAAATTTGTTCTGATGAGGTAGCCACTGAGGATAGGAAGATCGAGCTGTACAATAAAGTACGAGTTCATGTTGGAAAGAACAAGTTAACCAGCTTTGTTGCAGAGTTATTCTCATACAACAGGCTGCCTATTGTGCCGAAAACGAGAACTCAAAGTAGGATATTCTTCCCCTCAGTGGTTGCCAAATGTTTACTAGGAAGTTTTAGAAAGATGAGAAGAGTCATAAGCTTTCGCAGGAGGGGACACTACCCTTGGAGGGATATCAGAAGACAGTATTGA 819 0.4383 MAHTSLIMPNPNHASSPSRSPLSIQFSSIPAMDRIFSSKSFLYNRLRSQPLSLTVLKLDGSTFDIQVEKTATIAELKEAVKVVFSHMPQKGPGKISWPHVWRQFCLCYDGQKLVKDDDYLRNYGIKDGDQLRFIRHVSNYYGARRRKRSKKRVFHFKQHSRSSSQVNSYQPKEHSDDDEEEICSDEVATEDRKIELYNKVRVHVGKNKLTSFVAELFSYNRLPIVPKTRTQSRIFFPSVVAKCLLGSFRKMRRVISFRRRGHYPWRDIRRQY* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3131 272 ProSiteProfiles Ubiquitin domain profile. 51 134 IPR000626 GO:0005515
Ahy16g3131 272 CDD Ubl_SNRNP25 51 136 IPR040610 -
Ahy16g3131 272 MobiDBLite consensus disorder prediction 1 20 - -
Ahy16g3131 272 MobiDBLite consensus disorder prediction 157 181 - -
Ahy16g3131 272 Pfam Ubiquitin-like domain 52 137 IPR040610 -
Ahy16g3131 272 SUPERFAMILY Ubiquitin-like 48 140 IPR029071 -
Ahy16g3131 272 PANTHER - 4 268 - -
Ahy16g3131 272 SMART ubq_7 51 136 IPR000626 GO:0005515
Ahy16g3131 272 Gene3D - 45 144 - -
Ahy16g3131 272 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 4 268 IPR039690 GO:0000398|GO:0005689
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3131 Ahy-Chr16 147402455 147405891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3131 - - ahf:112697496 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3131 16 147402455 147405891 Ahy16g3131 16 147402455 147405891 ECH
Ahy16g3131 16 147402455 147405891 Ahy18g2706 18 130370388 130372667 ECH
Ahy16g3131 16 147402455 147405891 Ahy6g2433 6 108838457 108842034 hybridization
Ahy16g3131 16 147402455 147405891 Ahy18g2707 18 130373859 130374927 PCT
Ahy16g3131 16 147402455 147405891 Ahy8g2451 8 47250852 47251940 PCT
Ahy18g2707 18 130373859 130374927 Ahy16g3131 16 147402455 147405891 PCT
Ahy8g2451 8 47250852 47251940 Ahy16g3131 16 147402455 147405891 PCT