LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy15g3438	ATGCAACACTCTGCAAATCAAATGGCCAATTCTTACTCAGGTAATTCCAATCATATCCCAAAAGAAGACGCAAAGGAAACAAGTTCGCTGGTTGTTTCCTTTGGGGAACTGCTGATAGACTTTGTGCCAACAGTGGGAGGAGTGTCGCTGGCCGAAGCACCGGCTTTTCAGAAAGCTCCCGGTGGAGCTCCTGCCAATGTAGCTGTTGGTATATCTAGACTTGGAGGTTCATCGGCTTTCGTCGGAAAGGTTGGAGCAGACGAGTTCGGTTACATGTTGGCCAATATATTGAAGGAAAACAATGTTGACATGTCTGGCATGCGGTTTGACCCGAATGCTAGAACTGCATTAGCTTTTGTTACACTTAGAGCTGACGGTGAACGAGAATTCTTGTTTTTCCGGAATCCAAGTGCTGATATGCTTCTTCATGAATCAGAACTTGATATAAATCTCTTAAAGAAGGCTAGAGTCTTCCATTATGGCTCCATCAGCTTGATTGACGAGCCGTGCAAGTCCGCTCATCTTGCTGCTATGAGAATTGCCAGCAATTCTGGTAGTATTCTCTCTTATGATCCAAATTTGAGATTAGCACTATGGCCATCAGCCGAGGCTGCTCGCAAGGGCATAATGAGTATTTGGGATCAAGCCGATGTCATAAAGATAAGTGAGGAAGAGATTACATTTTTGACGGGTGGTGATGATCCTTATGATGATAATGTTGTATTGACGAAACTTTTTCATCCAAATCTCAAACTTCTAATTGTTACTGAAGGCTCATCTGGTTGTAGATATTACACCAAGGAATTCAGGGGCAAAGTTGGAGGTGTTAAAGTCAAACCTGTTGACACAACTGGTGCCGGTGATGCATTTGTCGGTGGATTTCTCTACAACTTGGCTTCTGACCCAAGTATTCTTCAGGATGAGAAACGGCTGCGAAAAGCTCTATATTTCGCAAATGTATGCGGCGCCATCACTGTGACTGAGAGAGGTGCCATTCCTGCAATGCCTACAAAGGAAGCTATCTTGCAATTCTTACTAGAATCTGCTTCAATATAG	1056	0.4375	MQHSANQMANSYSGNSNHIPKEDAKETSSLVVSFGELLIDFVPTVGGVSLAEAPAFQKAPGGAPANVAVGISRLGGSSAFVGKVGADEFGYMLANILKENNVDMSGMRFDPNARTALAFVTLRADGEREFLFFRNPSADMLLHESELDINLLKKARVFHYGSISLIDEPCKSAHLAAMRIASNSGSILSYDPNLRLALWPSAEAARKGIMSIWDQADVIKISEEEITFLTGGDDPYDDNVVLTKLFHPNLKLLIVTEGSSGCRYYTKEFRGKVGGVKVKPVDTTGAGDAFVGGFLYNLASDPSILQDEKRLRKALYFANVCGAITVTERGAIPAMPTKEAILQFLLESASI*	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy15g3438	351	CDD	bac_FRK	30	332	-	-
	Ahy15g3438	351	ProSitePatterns	pfkB family of carbohydrate kinases signature 2.	282	295	IPR002173	GO:0016773
	Ahy15g3438	351	PANTHER	FRUCTOKINASE-7-RELATED	21	347	-	-
	Ahy15g3438	351	PANTHER	HEXOKINASE FAMILY MEMBER	21	347	-	-
	Ahy15g3438	351	Gene3D	-	27	350	IPR029056	-
	Ahy15g3438	351	Pfam	pfkB family carbohydrate kinase	30	337	IPR011611	-
	Ahy15g3438	351	MobiDBLite	consensus disorder prediction	1	21	-	-
	Ahy15g3438	351	PRINTS	Ribokinase signature	253	264	IPR002139	GO:0016301
	Ahy15g3438	351	PRINTS	Ribokinase signature	56	75	IPR002139	GO:0016301
	Ahy15g3438	351	PRINTS	Ribokinase signature	211	226	IPR002139	GO:0016301
	Ahy15g3438	351	ProSitePatterns	pfkB family of carbohydrate kinases signature 1.	61	85	IPR002173	GO:0016773
	Ahy15g3438	351	SUPERFAMILY	Ribokinase-like	31	345	IPR029056	-
	Ahy15g3438	351	MobiDBLite	consensus disorder prediction	1	18	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy15g3438	Ahy-Chr15	156938731	156942643	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy15g3438	K00847		-	gmx:100778752	568.155

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy15g3438	15	156938731	156942643	Ahy19g3514	19	157857896	157860708	ECH
	Ahy15g3438	15	156938731	156942643	Ahy15g3438	15	156938731	156942643	ECH
	Ahy15g3438	15	156938731	156942643	Ahy5g3034	5	111879022	111882984	hybridization
	Ahy15g3438	15	156938731	156942643	Ahy19g3514	19	157857896	157860708	PCT
	Ahy15g3438	15	156938731	156942643	Ahy9g2114	9	109896920	109899804	PCT
	Ahy19g3514	19	157857896	157860708	Ahy15g3438	15	156938731	156942643	PCT
	Ahy9g2114	9	109896920	109899804	Ahy15g3438	15	156938731	156942643	PCT