Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0540 ATGGCTGACAAACTCATTTCAACACAAGTTTGCAGTTTATTTAGGGACACCAGACTTGTTTTCAAAGCAGACAACCTTGGTTGGGAAATATTGTCAATTGCAGTGCCTTCTGCTATGGCTTTGACAGCTGATCCTATTGCTTCACTGGTTGACACAGCATTCATTGGCCGAATAGGTGCAGTGGAGCTTGCTGCTGTAGGAGTATCCATAGCTCTCTTCAATCAAATATCGAGGATTGCAATTTTCCCACTCGTCAGTGTGACTACTTCTTTTGTGGCTGAGGAAGATGCCCTTACAGCAGCCAGCCCTCTGGTAGAGGATAGTGAATCCTTGGAAGAAGGTTCCATTCTGAAAGCTGAAATCAATGAACTTATACCAGATAAAGATGGAGATGTTCAGAAACCAGATTTGATCCATATGGACTCAAATGTAGTTAAGGTTGAGCATAAGAGAAGGCATATCCCTTCTGCATCATCAGCATTGGTAATTGGTGGTATTCTTGGCCTTGTCCAGGCAATATTCCTCATATTTGCAGCAAAACCTTTATTGCACTTCATGGGAGTAAATTATAACTACCTGACATTGAGATCTCTTGGCGCGCCGGCTGTTCTTCTCTCGTTAGCAATGCAGGGAGTCTTCCGAGGATTTAAAGACACTAAAACACCTCTATATGCTACTTTGGCAGGAGATTTGACCAACATAGCACTGGATCCTTTGTTCATGTTTGTATTCCGCTTAGGTGTTAGTGGTGCAGCCATTGCTCATGTTATATCTCAGTACCTAATTTCTGTAATACTCCTGTGGAAATTGATGCAAAAAGTTGATCTTATGCCTCCCAGCATCAAGCATCTGCAGTTTGATCGATTTCTCAAAAATGGTTTTCTGTTGTTAATGAGAGTAACTGCTGTAACATTCTGTGTCACTCTGGCCGCCTCACTAGCTGCACGCCAGGGATCAAAATCTATGGCTGCATTTCAAGTCTGCCTGCAGATTTGGCTGGCAGTATCTCTTCTTGCCGATGGTCTTGCTGTTGCTGGGCAGGCAATTCTTGCAGGCGCATTTGCTGCCAAGGACTATGACAAGGCCACTGCGACTGCAGCTCGAGTATTACAGATGGGTTTGGTTCTGGGATTGGCTCTTGCATTCATTCTTGGTGCAGGACTTCCTTTTGGAGCTAAACTATTTACAAGAGATGTTGATGTCCTCCACCTCATAAAAATTGGAATACCTTTTGTTGCAGCCACCCAACCCATCAATGCTTTGGCATTTGTATTTGATGGTATCAACTTTGGTGCATCTGACTTTGCATATTCAGCATTCTCTTTGCTTATAGTGGCAGTTGTCAGCATCATTTGCCTACTATTTTTATCAGCATCATTCATAGGAATTTGGGTTGCTTTGACCATCTATATGGGTCTTAGAGCATTTGCTGGCTTCTTGAGGATTGGAACAGGATCAGGACCTTGGAAGATCCTTAGGAAGTGA 1485 0.4323 MADKLISTQVCSLFRDTRLVFKADNLGWEILSIAVPSAMALTADPIASLVDTAFIGRIGAVELAAVGVSIALFNQISRIAIFPLVSVTTSFVAEEDALTAASPLVEDSESLEEGSILKAEINELIPDKDGDVQKPDLIHMDSNVVKVEHKRRHIPSASSALVIGGILGLVQAIFLIFAAKPLLHFMGVNYNYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATLAGDLTNIALDPLFMFVFRLGVSGAAIAHVISQYLISVILLWKLMQKVDLMPPSIKHLQFDRFLKNGFLLLMRVTAVTFCVTLAASLAARQGSKSMAAFQVCLQIWLAVSLLADGLAVAGQAILAGAFAAKDYDKATATAARVLQMGLVLGLALAFILGAGLPFGAKLFTRDVDVLHLIKIGIPFVAATQPINALAFVFDGINFGASDFAYSAFSLLIVAVVSIICLLFLSASFIGIWVALTIYMGLRAFAGFLRIGTGSGPWKILRK* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0540 494 CDD MATE_DinF_like 26 484 IPR044644 -
Ahy13g0540 494 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 139 493 IPR044644 -
Ahy13g0540 494 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 9 110 IPR044644 -
Ahy13g0540 494 PANTHER PROTEIN DETOXIFICATION 43 139 493 - -
Ahy13g0540 494 PANTHER PROTEIN DETOXIFICATION 43 9 110 - -
Ahy13g0540 494 Pfam MatE 302 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ahy13g0540 494 Pfam MatE 156 239 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ahy13g0540 494 TIGRFAM matE: MATE efflux family protein 36 464 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0540 Ahy-Chr13 5601551 5605504 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0540 K03327 - gmx:100780165 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0540 13 5601551 5605504 Ahy13g0540 13 5601551 5605504 ECH
Ahy18g0351 18 3044329 3048877 Ahy13g0540 13 5601551 5605504 ECH
Ahy12g1585 12 85558130 85565823 Ahy13g0540 13 5601551 5605504 ECH
Ahy18g0351 18 3044329 3048877 Ahy13g0540 13 5601551 5605504 PCT
Ahy8g1156 8 26927018 26931539 Ahy13g0540 13 5601551 5605504 PCT
Ahy13g0540 13 5601551 5605504 Ahy18g0351 18 3044329 3048877 PCT
Ahy13g0540 13 5601551 5605504 Ahy8g1156 8 26927018 26931539 PCT