Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0616 ATGTGCATTCAATACCTGGTTAATAAGCTTGCTATGGAGAATCAAAGGAGTGTTATTACCTTGATCCTTTTTCTGATCCTTACTAAAAGCGTAAGTTCAACTGAATTTGATAGCAGTGAATATGAAGAAGGGGAAAGCCATTCCATATCCTTCCAAAGCTCTAGGAGCGAAATGGGAGATGTCGAAGAAGGTGAATGGGAGATGGTGCAAACCAAGGGAAACCAATTTGTGGTGAGGGACCAACCTTTCTATGTGAATGGATTCAACACATACTGGCTGATGGTATTTGCTGCGGATGAGTCCACCAGAGGAAAGGTCAGTGAGGTGTTCAAGCATGCATCCTCAGTAGGCATGACAGTTTGCAGGACTTGGGCCTTCAACGACGGTCAATGGCGAGCCCTTCAGAAATCTCCATCAGTTTATGACGAACGCGTCTTCAAGGCACTAGATTTTGTGGTGAGTGAAGCAAAGAAATACAGAATAAGGCTCATACTGTCATTGGTAAACAACTGGGAGGCTTATGGCGGCAAAGCGCAGTATGTCAAATGGGGAACTGCTGCCGGCCTCAACTTGACCTCCGATGACGACTTCTTCTCACATCCAACTCTCAGAAGCTACTACAAGAACCATGTTAAGACGGTGCTCAACAGAGTAAATACGTACACAAACATCACCTACAAGGAAGACCCTACAATTTTCGCTTGGGAACTCATGAATGAGCCTCGATGTATCTTGGATTCCTCAGGTGATACATTACAGGAATGGATAAAAGAAATGGCATTCTATGTGAAGAGCATTGATACAAAGCACCTAGTGGAGATTGGTCTTGAAGGATTTTACGGACCCTCAACACCTCAAAGAGTTCAGTTCAACCCAAACGTATTTGCTCAACAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTCGGTGTAGACTTTGCTTCTGTTCACATCTATCCAGACTCTTGGATTTCACAATCAATTGCTGATACCCATCTCCCATTCATAAAGTCTTGGATGGAAGCCCACATCGAGGATGCTGAAAAGTACCTTGGAATGCCCGTTGTTTTTGCCGAGTTTGGTGTATCTTCAAAAGATCCTGGTTACAATTCATCATACAGAGACAACCTCATAAACACAGTGTACAAGACCATCCTTAACTCCACAAAGAAAGGAGGTAGCGGGGCTGGAAGCCTTTTGTGGCAGCTCTTTCCTGATGGAACAGACTACATGGATGATGGATATTCAATTGTTCTCTCAAAATCTCCTTCCACCTCAAGCATCATATCCCTTCAATCCACAAGGCTTGCTCTGTTCAACTCCTTGTGTTCTAAGAGATGTCACTGGAGTTGTAAGAAGAAAAGCATGTTCCAAAAAGTACTATATCATGATGAGCTCTAA 1404 0.4352 MCIQYLVNKLAMENQRSVITLILFLILTKSVSSTEFDSSEYEEGESHSISFQSSRSEMGDVEEGEWEMVQTKGNQFVVRDQPFYVNGFNTYWLMVFAADESTRGKVSEVFKHASSVGMTVCRTWAFNDGQWRALQKSPSVYDERVFKALDFVVSEAKKYRIRLILSLVNNWEAYGGKAQYVKWGTAAGLNLTSDDDFFSHPTLRSYYKNHVKTVLNRVNTYTNITYKEDPTIFAWELMNEPRCILDSSGDTLQEWIKEMAFYVKSIDTKHLVEIGLEGFYGPSTPQRVQFNPNVFAQQVGTDFIRNHQVLGVDFASVHIYPDSWISQSIADTHLPFIKSWMEAHIEDAEKYLGMPVVFAEFGVSSKDPGYNSSYRDNLINTVYKTILNSTKKGGSGAGSLLWQLFPDGTDYMDDGYSIVLSKSPSTSSIISLQSTRLALFNSLCSKRCHWSCKKKSMFQKVLYHDEL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0616 467 Pfam Cellulase (glycosyl hydrolase family 5) 81 382 IPR001547 GO:0004553|GO:0071704
Ahy12g0616 467 SUPERFAMILY (Trans)glycosidases 67 425 IPR017853 -
Ahy12g0616 467 Gene3D Glycosidases 66 440 - -
Ahy12g0616 467 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 18 467 - -
Ahy12g0616 467 PANTHER - 18 467 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0616 Ahy-Chr12 9891422 9894427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0616 16 467 Glycoside Hydrolase AT5G01930 68.282 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0616 K19355 - gmx:100801139 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0616 12 9891422 9894427 Ahy2g0517 2 7370220 7373065 hybridization
Ahy14g2154 14 120164276 120169810 Ahy12g0616 12 9891422 9894427 PCT
Ahy4g1898 4 110218968 110223709 Ahy12g0616 12 9891422 9894427 PCT
Ahy12g0616 12 9891422 9894427 Ahy14g2154 14 120164276 120169810 PCT
Ahy12g0616 12 9891422 9894427 Ahy4g1898 4 110218968 110223709 PCT