Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1471 ATGGCATCATCACCCATTCTCCAATTCACCCCACACTCTCCCACAAAACCCATCTCAGAAACACCCAGACTCGAATCCCACCTTCTTTCCCTCATACCCAAATGCTCCTCTCTCAGAGAGCTCAAGCAGATACAAGCCTACTCCATCAAGACCCACCTCCAAAATGACCTCTCTGTCCTCACCAAGCTCATCAATTTCTGCACCTCTAACCCCACACCCGATTCTATGGACCATGCCCACCGTGTGTTCGACCAAATTACTGAACCAGACATTGTCCTTTTCAACACCATGGCTCGTGGCTATGCACGCTATGATGACCCAATCAGAGCACTTCTTTTGTTTTTGCAGGTCTTTCGCTCCGGCATCCTTCCGGATGGGTACACATTTTCCTCACTCTTCAAGGCATGTGCACGGGTTAAGGCCTTGGAGGAAGGTAAACAACTGCATTGCCTTGCTTTGAAGCTTGGTGTTAGTGGTAACATGTATGTTTGCCCAACATTGATAAACATGTACACTGCTTGTAATGATGTTGATGCTGCCAGAAGGGTCTTTGATAAGGTTGATGAACCGTGTGTCGTTGCGTATAATGCCATGATTACTAGCTATGCTAGGAACAGTCAACCCAATGAGGCATTGGCTTTGTTGAGGGAATTGCAGGAGACTGGACTTATGCCTACTGATGTCACCATGCTTGTTGCACTCTCTTCTTGTGCTTTGTTGGGATCATTGGACTTAGGGAGGTGGATACATGAGTATGTCAAGAAGAACGGGTTTGATCGGTATGTGAAGGTGAATACTGCGCTTATTGACATGTATGCTAAATGTGGGAGCTTGGATGATGCGGTTTCGGTGTTTAGGAGCATGAATAGGCGAGACACGCAGGCTTGGTCAACAATGATTGTTGCTTATGCAAATCATGGGCATGGTTCCCGTGCCATATCAATGTTGGAAGAAATGAAAAGGGAAAAAGTTCGGCCTGATGAGATAACTTTTTTAGGTGTATTGTATGCTTGCAGTCACAATGGATTGGTAGAAGAAGGTTATGAGTATTTCCATAGCATGACTAATGAGTATGGGATTGTTCCTAATATCAAGCATTATGGGTGTATGGTGGATTTGCTTAGCCGAGCTGGACGCCTAGACGAAGCCTATAAGTTCATAGACAAATTACCGATTAAGCCCACACCGATCCTCTGGAGGACATTGCTCTCTGCTTGTAGCAGTCATGGCAATGTTGAGATGGGAAAGCAAGTAATTGAGAGAATTTTTGAACTGGATGATTCACATGGTGGGGATTACGTCGTTTTGTCAAACTTGTGTGCGAGATATGGAAGATGGGATGATGTGAATTTCTTAAGGAAAAAGATGGCAGAGAAAGGAGCTGTAAAAATTCCAGGATGTAGCTCTATAGAGGTTAACAATGTTGTGCATGAATTCTTCTCCGGGGATGGAGTTCATTCAACTTCGACCGCAGTGCACCATGCGCTCGATGAGTTGGTCAAGGAATTGAAGATTGCAGGGTATGTACCTGACACATCTCTAGTGTTTCATGCAGACATGGATGATGAAGAGAAGGAAATTATTCTTAGATATCACAGTGAGAAATTAGCCATTGGCTTTGGTCTCCTAAACACTCCCCCTGGAACCACAATTCGTGTGGTCAAGAACCTTAGAGTCTGTGGGGATTGCCATAATGCTGCTAAGTATATATCATTCATCTTTGGTAGGCAAATTATACTTAGAGATGTCCAAAGATTTCATCATTTCAAAGATGGGGAATGCTCCTGTGGAGATTACTGGTAG 1803 0.4432 MASSPILQFTPHSPTKPISETPRLESHLLSLIPKCSSLRELKQIQAYSIKTHLQNDLSVLTKLINFCTSNPTPDSMDHAHRVFDQITEPDIVLFNTMARGYARYDDPIRALLLFLQVFRSGILPDGYTFSSLFKACARVKALEEGKQLHCLALKLGVSGNMYVCPTLINMYTACNDVDAARRVFDKVDEPCVVAYNAMITSYARNSQPNEALALLRELQETGLMPTDVTMLVALSSCALLGSLDLGRWIHEYVKKNGFDRYVKVNTALIDMYAKCGSLDDAVSVFRSMNRRDTQAWSTMIVAYANHGHGSRAISMLEEMKREKVRPDEITFLGVLYACSHNGLVEEGYEYFHSMTNEYGIVPNIKHYGCMVDLLSRAGRLDEAYKFIDKLPIKPTPILWRTLLSACSSHGNVEMGKQVIERIFELDDSHGGDYVVLSNLCARYGRWDDVNFLRKKMAEKGAVKIPGCSSIEVNNVVHEFFSGDGVHSTSTAVHHALDELVKELKIAGYVPDTSLVFHADMDDEEKEIILRYHSEKLAIGFGLLNTPPGTTIRVVKNLRVCGDCHNAAKYISFIFGRQIILRDVQRFHHFKDGECSCGDYW* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1471 600 Gene3D Tetratricopeptide repeat domain 263 504 IPR011990 GO:0005515
Aev05g1471 600 Gene3D Tetratricopeptide repeat domain 26 188 IPR011990 GO:0005515
Aev05g1471 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Aev05g1471 600 MobiDBLite consensus disorder prediction 1 20 - -
Aev05g1471 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Aev05g1471 600 Pfam PPR repeat 266 291 IPR002885 -
Aev05g1471 600 Pfam PPR repeat 367 389 IPR002885 -
Aev05g1471 600 Pfam PPR repeat 92 122 IPR002885 -
Aev05g1471 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Aev05g1471 600 SUPERFAMILY TPR-like 257 429 IPR011990 GO:0005515
Aev05g1471 600 Pfam DYW family of nucleic acid deaminases 507 600 IPR032867 GO:0008270
Aev05g1471 600 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Aev05g1471 600 TIGRFAM PPR: pentatricopeptide repeat domain 330 364 IPR002885 -
Aev05g1471 600 TIGRFAM PPR: pentatricopeptide repeat domain 193 226 IPR002885 -
Aev05g1471 600 TIGRFAM PPR: pentatricopeptide repeat domain 266 291 IPR002885 -
Aev05g1471 600 Gene3D Tetratricopeptide repeat domain 189 254 IPR011990 GO:0005515
Aev05g1471 600 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 586 - -
Aev05g1471 600 Pfam PPR repeat family 190 237 IPR002885 -
Aev05g1471 600 Pfam PPR repeat family 292 338 IPR002885 -
Aev05g1471 600 Pfam E motif 409 471 IPR046848 -
Aev05g1471 600 PANTHER BNAA02G26650D PROTEIN 20 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1471 Aev-Chr5 11014659 11016461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1471 28 600 Glycoside Hydrolase AT3G49170 40.275 4.01e-148 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1471 - - gmx:100817794 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g1471 05 11014659 11016461 Aev01g2124 01 25658969 25660903 PCT
Aev03g0481 03 3508757 3512785 Aev05g1471 05 11014659 11016461 PCT