Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g2124 ATGGCGCTAGTTTGGTCCACACACAATCGTTTCTTCCTCGCTGCGCCATCACTTTCCCTCTCTTGTTTTGGCGTTCATCTTCTTCATCACAACACCGCTCCTCAGCTACACCACCCAACAGAACCTCACACCAAGTTTGCACCTTTTGAGCTCTATCAACAAAACCAACCAACGCCCATCAAAATTTTCCCTCAACCCAACAAAGAATTGGCTATTTCTTCCATAAAATCTGCTTCCCTTAAGACCCAGTTGCTTCAAATCCATGCTCACATTCTCCGCACAGCCCTTGTTGAAGACCCTGCAGTTTCTCTTCAGTTCTTGTACCGTTTAGCTCTCTCTGGCCCCTTGCAGGACCATAGCTATTCCCTCCGTTTCTTCGAGAATATTAGTTGCCCTGTGGTTTCTCATTACAACACCATGATCAGGGCCTATTCCATGAGTGATTCACCCCAAAAAGGTCTCTTTTTGTATAGAAATTTGAAGAGACGAGGTGTTTCTGCAGACCCTTTATCCTCTTCCTCTGCTATCAAGTGTTGCATCAGGTTTTTGTGTCTTCTTGGAGGGGTGCAGAGTTCAAGATATGAGTGTGAGCCAGATGATGTTACTTGTTTGCTTCTTCTTCAAGCTTGTGCTCATTTGAATGCCTTGGAATTTGGTGAACGAATTCACAGATATATCACAGAACGTGGTTATGAGGGTGCTGCCAATCTTTCCAATTCTCTCATAGCTATGTATTCGAGATGTGGTTGTTTAGATAAGGCTTATGAGGTGTTCAAGGGAACGCGCAATAAGAGTGTGGTTTCATGGAGTGCAATGATCTCTGGTTTGGCAGTGAATGGATATGGGAGACAAGCCATTGAAGCATTTGAAGAGATGCAGAGAATGGGAATCAAGCCTGATGATCAAACATTCACTGGAGTCCTTTCTGCTTGCAGTCATTCCGGATTGGTTATTGATGGAATGTCTTTTTTCCACCGTATGAGCAGAGATTTTGGAATAACACCCAACATCCATCATTATGGATGCATGGTTGATCTCTTGGGTCGTGCTGGTTTACTTCATAAGGCTTATCACCTTATTACCTCGATGGAGGTAAAGCCGGATTCGACAATATGGAGGACCTTGCTTGGAGCTTGCAGAATTTATGGCCATCTTACACTTGGTGAACGTGTAATTGAACACTTGATTGAAATGAGAGCCCAAGAAGCTGGGGATTATGTTTTGCTCCTGAATATTTATTCTTCAGCTGGTCACTGGGACAAGGTAGCAGAAGTGAGAAAACTGATGAAAGAAAAAGCAATCCAAACCACACCTGGTTGTAGCACGATTGAATTGAAAGGAATAGTACATGAGTTTGCTGTGGATGATATTTCACATCCGAGAATGGATGAGATCTATGAGACAATGGATGAAATTAATAAGCAGCTCAAGATTGCAGGTTATGTTGTTGATCCTTCATCTGAGATGCATAAGATGGATGACAAAGAAAAGGGATATGTGCTCTCTTATCACAGCGAAAAATTGGCTGTTGCTTTTGGTGTTCTTGCCACTCCACCAGGCACAACACTGAGAGTGGCCAATAATCTCCGCTTATGTGCTGATTGCCACAATTTCCTCAAAACATTTTCCTGGGTTTACAACCGCGATGTGGTTCTAAGGGACCATAATCGGTTTCACCACTTCCGCGGAGGGCGCTGCTCCTGTAATGATTACTGGTAG 1719 0.4363 MALVWSTHNRFFLAAPSLSLSCFGVHLLHHNTAPQLHHPTEPHTKFAPFELYQQNQPTPIKIFPQPNKELAISSIKSASLKTQLLQIHAHILRTALVEDPAVSLQFLYRLALSGPLQDHSYSLRFFENISCPVVSHYNTMIRAYSMSDSPQKGLFLYRNLKRRGVSADPLSSSSAIKCCIRFLCLLGGVQSSRYECEPDDVTCLLLLQACAHLNALEFGERIHRYITERGYEGAANLSNSLIAMYSRCGCLDKAYEVFKGTRNKSVVSWSAMISGLAVNGYGRQAIEAFEEMQRMGIKPDDQTFTGVLSACSHSGLVIDGMSFFHRMSRDFGITPNIHHYGCMVDLLGRAGLLHKAYHLITSMEVKPDSTIWRTLLGACRIYGHLTLGERVIEHLIEMRAQEAGDYVLLLNIYSSAGHWDKVAEVRKLMKEKAIQTTPGCSTIELKGIVHEFAVDDISHPRMDEIYETMDEINKQLKIAGYVVDPSSEMHKMDDKEKGYVLSYHSEKLAVAFGVLATPPGTTLRVANNLRLCADCHNFLKTFSWVYNRDVVLRDHNRFHHFRGGRCSCNDYW* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g2124 572 PANTHER BNAA06G20590D PROTEIN 71 192 - -
Aev01g2124 572 TIGRFAM PPR: pentatricopeptide repeat domain 137 168 IPR002885 -
Aev01g2124 572 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Aev01g2124 572 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Aev01g2124 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Aev01g2124 572 Gene3D Tetratricopeptide repeat domain 192 320 IPR011990 GO:0005515
Aev01g2124 572 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 193 557 - -
Aev01g2124 572 Pfam E motif 383 444 IPR046848 -
Aev01g2124 572 PANTHER BNAA06G20590D PROTEIN 193 557 - -
Aev01g2124 572 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 71 192 - -
Aev01g2124 572 Pfam PPR repeat family 264 312 IPR002885 -
Aev01g2124 572 Pfam DYW family of nucleic acid deaminases 480 572 IPR032867 GO:0008270
Aev01g2124 572 Gene3D Tetratricopeptide repeat domain 321 509 IPR011990 GO:0005515
Aev01g2124 572 Pfam PPR repeat 239 259 IPR002885 -
Aev01g2124 572 Pfam PPR repeat 136 165 IPR002885 -
Aev01g2124 572 Pfam PPR repeat 339 364 IPR002885 -
Aev01g2124 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g2124 Aev-Chr1 25658969 25660903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g2124 86 572 Glycoside Hydrolase AT3G49170 36.105 6.84e-106 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g2124 - - lja:Lj0g3v0169319.1 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2124 01 25658969 25660903 Aev01g2124 01 25658969 25660903 ECH
Aev05g1471 05 11014659 11016461 Aev01g2124 01 25658969 25660903 PCT