Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1339 ATGTTTTCAGTTCCAGGAATCCCGAACAGAGGAGACCATAGTAAGATCAAAGGGACAGTGGTCTTGATGCCTGCGGCTGCTGATGTCAACCTTAATGCTTTCTTGGGCCCATGTGTCTCCCTTCAGCTCATTAGTGCTACCAAGCCTGATGGAAATGGAAAAGGAAAAGTTGGAAAGGAGATGTTCTTGGAAGAGATTATTACTTCGCTACCAAGTTTGGGAGCAGGAGAATCTGCATTCAATATTAATTTTGAATGGGACATTAATAGCATGGGAATCCCGGGTGCTTTTTACATAAAGAACAACATGCAAGATGAGTTTTTCCTCAAGAGTTTGACTCTTGAAGACGTTCCAAACCAAGGAACCATCCGTTTTGTTTGCAACTCATGGGTTTATAACACTAAACTTTACGAAAGCGTGCGCATTTTCTTTGCCAACCATAGTTATGTTCCAAGTGAGACACCAGCAGCAGTTGTGGAGTATAGAGAAGAAGAATTGAAGAGTTTAAGAGGAAATGGAACAGGAGAGCGCCAGAAATGGGATAGGATATATGATTATGATGTCTACAATGATTTGGGCGATCCAGATAAGAGTCAAGACCTTGCTCGTCCCATTCTTGGAGGCTCTACCACCCTTCCCTATCCTCGTAGGGGAAGAACTGGTCGATATCCAACAAACACAGATCCGAATACTGAGAAACGAGGTGAAGTAATTTATGTTCCAAGAGATGAAAATTTGAGTCACTTGAAATCTTCGGATGCTCTTGAGCAAGGAACAAAATCCTTAACTCAATTAGTCTTGCCTGCATTCGAATCTGCATTCGATATGAAATTCACGGCACTTGAGTTTGGTAGCTTCCAAGAAGTGCATGATCTCTATGAACGTGGAATTATGCTTCCTACAGATGTAATTACCATAATTACCCCCTTACCAGTAATCCAAGATCTCTACCGTACCGATGCTCAAAAACAATTCCTCCAGTTTCCACAACCTCACGTCGTTAAGGTGAGTAAGTCTGCATGGATGACCGATGAAGAATTTGCAAGAGAGATGATTGCGGGTGTAAATCCTTGCGTAATTCGTGGTCTTCAAGAGTTTCCTCCAAAAAGCAATCTAGATCCTACAATCTACGGTGATCAAACCAGTAAGATAACAGCAGAGGTCCTTGATTTAGATGGATACACAGTGGATGAGGCACTTGCAAGTCGGAGGTTATTTGCATTAGATTACCATGATGTATTCATGCCATATATAAGGAAGATAAATCAGACTTGTGCCAAGGCTTATGCCACAAGAACTATCCTTTTTCTGAGAGAAAATGGAACCTTAAAGCCAGTGGCCATCGAATTAAGTTTGCCACATCATGATGGGGATCAGTTAGGTGCTGTCAGTCAAGTCATCTTACCTGCAAACGAAGGCGTTGAAAGTACAATTTGGCTACTGGCCAAAGCTTATGTTGTCGTAAATGACTCTTGCTACCATCAACTCATGAGCCATTGGTTAAATACTCATGCGGTGATGGAGCCATTTGTCATAGCAACACACCGACAACTTAGTGCACTTCACCCAATTTACAAGCTTCTGACTCCTCACTATCGTAACAACATGAACATCAACGCACTTGCTAGGCAATCTCTAATTAGTGCTGATGGCATAATAGAGCGATCATTTTTGCCCTCAAAATATTCTGTGGAGATGTCTTCAGTGGTTTATAAGAATTGGGTTTTCACTGATCAAGCACTACCTGCAGAACTTATCAAGAGAGGAGTGGCAATTAAGGATCCATCTGCCCCACATGGACTTCATCTTCTGATAGAGGACTATCCTTATGCTGTTGATGGGCTGGAGATATGGGCTGCAATTAAAACATGGGTCCAAGAATATGTGTCCTTGTACTATGAAACAGATGATGATGTTAAAACTGACTCTGAACTCCAACATTGGTGGAAAGAAGCTGTAGAGATAGGTCATGGTGATTTGAAAGACAAGCCATGGTGGCCTAAGTTGCAGACACTTGAAGAGCTTGTAGAAGTTTGCATCATTATCTTATGGATTGCTTCAGCTCTCCATGCAGCCGTTAATTTTGGTCAGTATCCTTATGGAGGTTTGATTATGAACCGCCCAACTGCTTCTAGAAGGTTGCTTCCTGAACAAGGCACACCAGAATATGAAGAAATGGCGAAGAACCATGAAAAGGCTTATTTGAGAACAATTTCATCAAAGTTTCAGACTCTGATTGAACTTTCAGTGATAGAGATCTTGTCGACTCATGCTTCTGATGAGGTATACCTTGGCCAAAGGGACAACCCACATTGGACTTCTGATTCAAAAGCATCACAAGCCTTTCAAAAATTTGGAAACAAGCTGAAGGAAATTGAGGAAAAACTCATGAGGAGGAACAATGATCCGAATCTGTCCAATCGGCTTGGCCCGGTTGAACTGCCATACACTTTGCTCCATCCTAGCAGTGGGGAAGGAATCACTTTTAGGGGAATTCCTAATAGCATCTCTATCTAA 2517 0.4199 MFSVPGIPNRGDHSKIKGTVVLMPAAADVNLNAFLGPCVSLQLISATKPDGNGKGKVGKEMFLEEIITSLPSLGAGESAFNINFEWDINSMGIPGAFYIKNNMQDEFFLKSLTLEDVPNQGTIRFVCNSWVYNTKLYESVRIFFANHSYVPSETPAAVVEYREEELKSLRGNGTGERQKWDRIYDYDVYNDLGDPDKSQDLARPILGGSTTLPYPRRGRTGRYPTNTDPNTEKRGEVIYVPRDENLSHLKSSDALEQGTKSLTQLVLPAFESAFDMKFTALEFGSFQEVHDLYERGIMLPTDVITIITPLPVIQDLYRTDAQKQFLQFPQPHVVKVSKSAWMTDEEFAREMIAGVNPCVIRGLQEFPPKSNLDPTIYGDQTSKITAEVLDLDGYTVDEALASRRLFALDYHDVFMPYIRKINQTCAKAYATRTILFLRENGTLKPVAIELSLPHHDGDQLGAVSQVILPANEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVMEPFVIATHRQLSALHPIYKLLTPHYRNNMNINALARQSLISADGIIERSFLPSKYSVEMSSVVYKNWVFTDQALPAELIKRGVAIKDPSAPHGLHLLIEDYPYAVDGLEIWAAIKTWVQEYVSLYYETDDDVKTDSELQHWWKEAVEIGHGDLKDKPWWPKLQTLEELVEVCIIILWIASALHAAVNFGQYPYGGLIMNRPTASRRLLPEQGTPEYEEMAKNHEKAYLRTISSKFQTLIELSVIEILSTHASDEVYLGQRDNPHWTSDSKASQAFQKFGNKLKEIEEKLMRRNNDPNLSNRLGPVELPYTLLHPSSGEGITFRGIPNSISI 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1339 838 ProSitePatterns Lipoxygenases iron-binding region signature 1. 494 508 IPR020833 GO:0016702|GO:0046872
Aed1g1339 838 Pfam Lipoxygenase 158 821 IPR013819 GO:0016702|GO:0046872
Aed1g1339 838 Pfam PLAT/LH2 domain 47 144 IPR001024 GO:0005515
Aed1g1339 838 Gene3D - 472 837 - -
Aed1g1339 838 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 15 149 IPR036392 GO:0005515
Aed1g1339 838 ProSitePatterns Lipoxygenases iron-binding region signature 2. 521 531 IPR020834 GO:0016702|GO:0046872
Aed1g1339 838 Gene3D - 340 471 - -
Aed1g1339 838 PRINTS Lipoxygenase signature 514 534 IPR013819 GO:0016702|GO:0046872
Aed1g1339 838 PRINTS Lipoxygenase signature 476 493 IPR013819 GO:0016702|GO:0046872
Aed1g1339 838 PRINTS Lipoxygenase signature 494 511 IPR013819 GO:0016702|GO:0046872
Aed1g1339 838 ProSiteProfiles PLAT domain profile. 16 145 IPR001024 GO:0005515
Aed1g1339 838 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 148 838 IPR013819 GO:0016702|GO:0046872
Aed1g1339 838 PRINTS Plant lipoxygenase signature 180 196 IPR001246 GO:0016491
Aed1g1339 838 PRINTS Plant lipoxygenase signature 326 342 IPR001246 GO:0016491
Aed1g1339 838 PRINTS Plant lipoxygenase signature 365 384 IPR001246 GO:0016491
Aed1g1339 838 PRINTS Plant lipoxygenase signature 751 765 IPR001246 GO:0016491
Aed1g1339 838 PRINTS Plant lipoxygenase signature 213 232 IPR001246 GO:0016491
Aed1g1339 838 PRINTS Plant lipoxygenase signature 429 453 IPR001246 GO:0016491
Aed1g1339 838 PRINTS Plant lipoxygenase signature 280 301 IPR001246 GO:0016491
Aed1g1339 838 PRINTS Plant lipoxygenase signature 115 133 IPR001246 GO:0016491
Aed1g1339 838 PRINTS Plant lipoxygenase signature 141 162 IPR001246 GO:0016491
Aed1g1339 838 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 30 838 - -
Aed1g1339 838 SUPERFAMILY Lipoxigenase 150 838 IPR036226 -
Aed1g1339 838 MobiDBLite consensus disorder prediction 199 232 - -
Aed1g1339 838 SMART LH2_4 14 146 IPR001024 GO:0005515
Aed1g1339 838 Gene3D PLAT/LH2 domain 9 149 - -
Aed1g1339 838 Gene3D - 150 249 - -
Aed1g1339 838 Gene3D - 250 339 IPR027433 -
Aed1g1339 838 PANTHER LIPOXYGENASE 30 838 IPR000907 GO:0016702|GO:0046872
Aed1g1339 838 CDD PLAT_LH2 15 146 IPR042057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1339 Aed-Chr1 12480788 12484389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1339 6 838 Acyl Lipid Metabolism Gene Families AT1G55020 56.476 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1339 K15718 - gmx:547923 1394.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1339 1 12480788 12484389 Aed2g0342 2 2268940 2275456 PCT
Aed2g0341 2 2261226 2265988 Aed1g1339 1 12480788 12484389 PCT