Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0342 ATGTTGATTGGTGGTCTCTTAAACAGGCGTCGCCCTAAGATCAAGGGCACCGTGGTGTTGATGACCAAGAATGTGTTCGACGTCAACGACTTCATGGCCACTACTAGGGGCGGTCCACTCGGCCTTGCCAGTGGCATCAAGGGCGCCGCCGATGCCATCGTTGGTGGCATAGTCGATGGTGCTACCGCCATCTTCAGCCGTAACATTGCCATTCGCTTGATCAGTGCTACCAAGGCTGATGGGCTTGGACATGGGAAAGTTGGTGATGAAACCTTTTTGGAGAAACATCTTCCTTCGTTACCAAACTTGGGAGCTAGGCAAGATGCATTCAGTGTTTATTTTGAATGGGATGAGAGTTTGGGAATTCCAGGAGCATTTTACATAAAAAACTTTACGCAGTCTGAGTTTTTCCTTGTGAGTCTCACTCTTGAAGACATTCCTAATCATGGCAAAATTAGCTTTGTTTGCAACTCTTGGGTTTACAACGCCAAGAAGTACGGCAAAAAGGATCGTATTTTCTTTGCTAATAAGACATATCTTACAAATGATACTCCAAGTCCATTAATGAGGTACAGAAGAGAAGAACTGGAAAATATAAGAGGAAATGGAAAAGGGGAGCGAAAGGAATATGATAGGATCTATGATTATGATGTCTATAATGATTTAGGAAACCCAGACAAGAGCGATGATCTTGCTCGTCCTATTCTTGGAGGCTCTAGTGAATATCCATACCCTCGCAGGGGAAGAACTGGTAGAAAATCAACCAGGAAAGACTCCAAGTGTGAGACACCAACCAGCGACACATACATTCCGAGAGATGAAAATTTCGGACACTTGAAGTCATCAGACTTCCTTACATATGCAATAAAAGCCTTAACTCAAAACGTTTTACCTAAATTTAACACTGCGTTTGGTCTTAATAACGAGTTCGATAGCTTCCAGGACGTGCGTTGTCTCTTTGAAGGTGGAGTTCATCTCCCTACAGACATCATCAGCCAAATTAGCCCCATACCAGTGCTTAAGGAACTCTTCCGCACTGATGGTGAGCAAGCCCTCAAGTTTCCACCACCTCAGGTCATGAAAGTTGATAAGTCTGCATGGATGACTGATGAAGAATTTGGAAGAGAGATGCTTGCTGGTGTTAATCCTGGCATGATTCAACGCCTTCAAGAGTTCCCTCCAAAGAGCAAGCTAGACCCCGCAAAGTATGGTGATCAAACTAGTACAATGACCAAACAACAGTTGGAGATCAACCTTGGTGGACTCACCGTGGAACAGGCACTGAACGGCAACAGATTGTTCATATTAGATCACCATGATGCATTCATACCGTTTCTGGAGAGGATCAATAGTCTGCCGACAGCAAAGTCTTATGCGACCAGAACCATCCTTTTCTTGCAAGATGATGGGAAACTGAAGCCATTGGCCATTGAATTAAGTGTGCCAAATTCTAGTGGGTATGGAGTCATTAGTAGAGTCATCTTACCCGCAACCGGAGGCACAGCTGAAGGCACAATTTGGCTACTTGCCAAGGCTTATGTTGTTGTCAATGACTCCAGCTATCATCAACTCATAAGCCACTGGTTGAATACTCATGCTGTGATGGAGCCATTTGTGATAGCAACAAACAGGCACCTCAGTGTGCTGCACCCTATTTATAAACTTCTGTTTCCTCACTACCGTGACACAATGAATATCAATGGACTTGCTCGACAATCGCTTATCACCGCAGGTGGCGTTATTGAGCGATCATTTTTGCCTGGGGAATTCTCTCTGCGCATAGGAATGGCAATTGAGGATCCAAGTGCCCCTCATGGGCTTAGGCTTGTGATAGAGGACTACCCTTTTGCTGTTGATGGAATAGAAATATGGAATGCTATCGAGACATGGGTTAAGGAGTATGTCTCATTGTATTACTCAACAAACGATGCAATCAAGAAAGACTCAGAACTCCAAGCTTGGTGGAAGGAAGTTATTGAGGTTGGTCACGGTGACTTGAAGCACAAGACATGGTGGCCTAAGTTGAACACTCCTCAAGACTTGGTTCAAATCTGTTCCATTATCATATGGATTGCTTCAGCACTCCATGCAGCTGTGAATTTCGGACAATACCCTTATGGAGGTTTGATCCTAAACCGTCCAACCATAACCAGAAGATTGCTCCCGGAGCCAGGAGAGAAAGAATATGGAGAGCTTTCAAGCAATCCTCAAAAGGTTTATCTGAGAACAATAACAAGAAAAGTTGAGGCACTTGTGGACCTTTCAGTGATAGAGATATTGTCAAGGCATGCTTCGGACGAGGTGTACCTTGGGGAGAGGGACAATCCGGATTGGACTGATGACCAGAAGGCACGTGAAGCTTTTTCAAGGTTTGGAAAGAAGCTGAAGGATATTGAGGGGAGAATCAATGATAGGAACAATGATTTAAGCCTTAAAAACCGTAAAGGACCGGTTGAGATGCCCTACACTGTGCTTATTCCTTCTTGTGAGGAGGAAGGCCTCACTTTCAGAGGAATTCCCAACAGCATCTCTATCTAA 2538 0.4448 MLIGGLLNRRRPKIKGTVVLMTKNVFDVNDFMATTRGGPLGLASGIKGAADAIVGGIVDGATAIFSRNIAIRLISATKADGLGHGKVGDETFLEKHLPSLPNLGARQDAFSVYFEWDESLGIPGAFYIKNFTQSEFFLVSLTLEDIPNHGKISFVCNSWVYNAKKYGKKDRIFFANKTYLTNDTPSPLMRYRREELENIRGNGKGERKEYDRIYDYDVYNDLGNPDKSDDLARPILGGSSEYPYPRRGRTGRKSTRKDSKCETPTSDTYIPRDENFGHLKSSDFLTYAIKALTQNVLPKFNTAFGLNNEFDSFQDVRCLFEGGVHLPTDIISQISPIPVLKELFRTDGEQALKFPPPQVMKVDKSAWMTDEEFGREMLAGVNPGMIQRLQEFPPKSKLDPAKYGDQTSTMTKQQLEINLGGLTVEQALNGNRLFILDHHDAFIPFLERINSLPTAKSYATRTILFLQDDGKLKPLAIELSVPNSSGYGVISRVILPATGGTAEGTIWLLAKAYVVVNDSSYHQLISHWLNTHAVMEPFVIATNRHLSVLHPIYKLLFPHYRDTMNINGLARQSLITAGGVIERSFLPGEFSLRIGMAIEDPSAPHGLRLVIEDYPFAVDGIEIWNAIETWVKEYVSLYYSTNDAIKKDSELQAWWKEVIEVGHGDLKHKTWWPKLNTPQDLVQICSIIIWIASALHAAVNFGQYPYGGLILNRPTITRRLLPEPGEKEYGELSSNPQKVYLRTITRKVEALVDLSVIEILSRHASDEVYLGERDNPDWTDDQKAREAFSRFGKKLKDIEGRINDRNNDLSLKNRKGPVEMPYTVLIPSCEEEGLTFRGIPNSISI 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0342 845 Pfam PLAT/LH2 domain 84 174 IPR001024 GO:0005515
Aed2g0342 845 PRINTS Lipoxygenase signature 522 539 IPR013819 GO:0016702|GO:0046872
Aed2g0342 845 PRINTS Lipoxygenase signature 542 562 IPR013819 GO:0016702|GO:0046872
Aed2g0342 845 PRINTS Lipoxygenase signature 504 521 IPR013819 GO:0016702|GO:0046872
Aed2g0342 845 MobiDBLite consensus disorder prediction 225 268 - -
Aed2g0342 845 PANTHER LIPOXYGENASE 2 845 - -
Aed2g0342 845 CDD PLAT_LH2 13 176 IPR042057 -
Aed2g0342 845 Gene3D PLAT/LH2 domain 5 179 - -
Aed2g0342 845 SUPERFAMILY Lipoxigenase 182 845 IPR036226 -
Aed2g0342 845 ProSitePatterns Lipoxygenases iron-binding region signature 1. 522 536 IPR020833 GO:0016702|GO:0046872
Aed2g0342 845 Gene3D - 180 279 - -
Aed2g0342 845 ProSitePatterns Lipoxygenases iron-binding region signature 2. 549 559 IPR020834 GO:0016702|GO:0046872
Aed2g0342 845 PRINTS Plant lipoxygenase signature 210 226 IPR001246 GO:0016491
Aed2g0342 845 PRINTS Plant lipoxygenase signature 352 368 IPR001246 GO:0016491
Aed2g0342 845 PRINTS Plant lipoxygenase signature 391 410 IPR001246 GO:0016491
Aed2g0342 845 PRINTS Plant lipoxygenase signature 757 771 IPR001246 GO:0016491
Aed2g0342 845 PRINTS Plant lipoxygenase signature 171 192 IPR001246 GO:0016491
Aed2g0342 845 PRINTS Plant lipoxygenase signature 243 262 IPR001246 GO:0016491
Aed2g0342 845 PRINTS Plant lipoxygenase signature 144 162 IPR001246 GO:0016491
Aed2g0342 845 PRINTS Plant lipoxygenase signature 307 328 IPR001246 GO:0016491
Aed2g0342 845 PRINTS Plant lipoxygenase signature 458 482 IPR001246 GO:0016491
Aed2g0342 845 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 179 IPR036392 GO:0005515
Aed2g0342 845 Gene3D - 500 592 - -
Aed2g0342 845 Gene3D - 593 844 - -
Aed2g0342 845 PANTHER LIPOXYGENASE 2 845 IPR000907 GO:0016702|GO:0046872
Aed2g0342 845 Gene3D - 366 498 - -
Aed2g0342 845 Gene3D - 280 365 IPR027433 -
Aed2g0342 845 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 178 845 IPR013819 GO:0016702|GO:0046872
Aed2g0342 845 SMART LH2_4 12 176 IPR001024 GO:0005515
Aed2g0342 845 ProSiteProfiles PLAT domain profile. 46 174 IPR001024 GO:0005515
Aed2g0342 845 Pfam Lipoxygenase 188 594 IPR013819 GO:0016702|GO:0046872
Aed2g0342 845 Pfam Lipoxygenase 594 827 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0342 Aed-Chr2 2268940 2275456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0342 1 845 Acyl Lipid Metabolism Gene Families AT1G55020 52.834 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0342 K15718 - gmx:100802459 1412.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1339 1 12480788 12484389 Aed2g0342 2 2268940 2275456 PCT