Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1790 ATGTCGGTTGCTGTGAGACCGATTCTTTCAGAATCGGTGCCGCAGTGGCAAGGGCGTTGCTCTGGCGAATCTATCCTGATATATCTAACCGTAGGCGGTGCTGTGAGACCAATGCGCGTGTTGGAGTCTGATTCCATAGCTTCGGTGAAAATGAGGATTCAAACATGCAAAGGAATCGCAGGAAAGAAGAAGCAGAAACTGGTCTATGATGGAAGGGAGCTTGCCCGCAAGGATGCACTCATCAAGGACTATGGTATCACTGCTGGCAATGTTCTTCACTTGGTTCTCCGTCTCTCTGACATGATCTTCATTGTTGTGAGGACTACCTGTGGGAAAGAGTTTGAATTTCAGATTGACCGACATAGAAATGTGGGGTATCTTAAGCAACGCATTAAGAAGAAGAAGGGAAAGGATTTCATTGATCTTGAGGGTGGTCAAGAGCTTTTCTGTGGTGAGGAAGAGCTCCATGACCAGAGGTTCTTCCATGACATATGCAACACTGATGATCCTGATGGTGTCATTCATTTGGTAGTTCAAAAATCCGCAAAGGTTAATACCAAACCAGTTCACAAGGATTTGGAGCTTTCGGTTGTTGCTGACGACGGCTCTGGAGTGGGAGAGAATAATCAGCTGACACCAAAGATACCACCTGGTGTAGATTTCTGGTTGGAACCAGTTTTTGTAAATCCTAAGGTCAGTTTTTTCCCTTTTCTGTGGGACTTTATTGGCTCCACATTGGATGGGTTGAAGAAAGGAAATAACCCTATCAGATCCTCGGAGGGCACAGGTGGGACTTACTTCATGCAAGATTCAGCAGGTATGGAGTATGTTTCAATTTTCAAGCCCATTGACGAAGAGCCTAATGCAGTGAATAACCCGCAAGGCCTACCCGTATCCTCTAACGGTGAAGGTTTGAAAAGAGGGACAAAGGTTGGAGAAGGAGCTATGAGAGAAGTTGCAGCCTATATATTAGATCATCCAAGAGCCGGGCCAAGGTTGGTGACAGGTGAAGCAATAGGCTTCGCTGGGGTTCCCCCAACTGTCATGATCCAGTGCTTACACAAAGCCTTTAACCACCCAGATGGGTTTGATTGCTCCTTAAAGCATTCCAAGGTGGGGTCATTGCAGATGTTTATGAGCAATGATGGTAACTGTGAGGACCTTGGACCAGGGGCTTTTTCTGTCGAGGAGGTGCATAAGATCACTGTGCTTGATCTAAGAATGGCTAATGCAGATAGACATGCTGGGAATATATTGTTCAGAAAAGAAGAAGGTGGCCACACTTCACTCATTCCCATTGATCATGGCTACTGTCTACCAGAGAAATTTGAGGATTGCACATTTGATTGGCTTTACTGGCGCCAAGCACGCCAGCCTTACTCCCCTGACACGGTTGATTATATCAAATCTCTGGATGCCGAGAAAGACATGGAGCTTCTGAAATATTACGGGTGGGATGTCCCAGTTGAGTGTGCAAGAACACTCCGCATCTCCACAATGTTGTTGAAGAAAGGGGTTGAGAGAGGTCTCACTCCCCATGACATTGGAAGCATAATGTGTAGGGAAAATTTGAACAAGGAATCTGTAATCGAGGAGATTATTTGTGAAGCCCAAGAATTATTGCTATCTGGCGTTGAGGAATATGTGTTTCTTGAATCTGTCTCCAAGATCATGGATTCCTGCCTTGATAAGCTTGCAAAATAG 1704 0.4548 MSVAVRPILSESVPQWQGRCSGESILIYLTVGGAVRPMRVLESDSIASVKMRIQTCKGIAGKKKQKLVYDGRELARKDALIKDYGITAGNVLHLVLRLSDMIFIVVRTTCGKEFEFQIDRHRNVGYLKQRIKKKKGKDFIDLEGGQELFCGEEELHDQRFFHDICNTDDPDGVIHLVVQKSAKVNTKPVHKDLELSVVADDGSGVGENNQLTPKIPPGVDFWLEPVFVNPKVSFFPFLWDFIGSTLDGLKKGNNPIRSSEGTGGTYFMQDSAGMEYVSIFKPIDEEPNAVNNPQGLPVSSNGEGLKRGTKVGEGAMREVAAYILDHPRAGPRLVTGEAIGFAGVPPTVMIQCLHKAFNHPDGFDCSLKHSKVGSLQMFMSNDGNCEDLGPGAFSVEEVHKITVLDLRMANADRHAGNILFRKEEGGHTSLIPIDHGYCLPEKFEDCTFDWLYWRQARQPYSPDTVDYIKSLDAEKDMELLKYYGWDVPVECARTLRISTMLLKKGVERGLTPHDIGSIMCRENLNKESVIEEIICEAQELLLSGVEEYVFLESVSKIMDSCLDKLAK 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1790 567 ProSiteProfiles Ubiquitin domain profile. 23 101 IPR000626 GO:0005515
Aed11g1790 567 Pfam Phosphatidylinositol 3- and 4-kinase 261 513 IPR000403 -
Aed11g1790 567 SUPERFAMILY Ubiquitin-like 97 179 IPR029071 -
Aed11g1790 567 SMART ubq_7 102 179 IPR000626 GO:0005515
Aed11g1790 567 SMART ubq_7 25 97 IPR000626 GO:0005515
Aed11g1790 567 SUPERFAMILY Ubiquitin-like 30 99 IPR029071 -
Aed11g1790 567 Gene3D - 26 103 - -
Aed11g1790 567 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 567 IPR044571 -
Aed11g1790 567 SUPERFAMILY Protein kinase-like (PK-like) 408 565 IPR011009 -
Aed11g1790 567 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 252 549 IPR000403 -
Aed11g1790 567 CDD Ubl_ubiquitin_like 104 177 - -
Aed11g1790 567 Pfam Ubiquitin family 37 98 IPR000626 GO:0005515
Aed11g1790 567 Gene3D - 104 194 - -
Aed11g1790 567 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 2 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1790 Aed-Chr11 21250563 21253588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1790 2 566 Acyl Lipid Metabolism Gene Families AT5G24240 55.709 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1790 - - gmx:100787492 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1790 11 21250563 21253588 Aed11g1790 11 21250563 21253588 ECH
Aed11g1790 11 21250563 21253588 Aed2g0541 2 3920658 3923829 ECH
Aed11g1790 11 21250563 21253588 Aed5g2371 5 25213682 25216511 PCT